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Name : HCW_04840 (HCW_04840) Accession : YP_006222865.1 Strain : Helicobacter cetorum MIT 00-7128 Genome accession: NC_017737 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 1042193 - 1043512 bp Length : 1320 bp Strand : + Note : COG2056 Predicted permease DNA sequence : ATGTTAGAAAGTAGCGCTATTTCTATATGGGTTAATCCAGCCTTTATTGCTATTATTGTGATGTGTGTCTTAAGTTTATT GCGCCTAAACATCATGCTTTCTATGATTAGCGCCACTTTAATTGCTGGACTTATGGGGGGGCTTAGTTTAACTGAGAGTT TTAATGTTATGATAGATGGCATGAAAGGCAATTTAAAAATTGCCTTAAGCTATATTCTTTTGGGGGCTTTAGCAGTGGCT ATTGCTAAAAGTAATTTGATTAAAATTGCTTTAAGCAAGTTGGTGTGTTTTATGGACCAAAAACGCATGATTTTTTGCTT TGTGATTGCTTTTATAGCGTGCTTTTCACAGAATCTTATTCCAGTGCATATCGCCTTTATTCCCATTCTTATTCCCCCAT TACTTCATGTGATGAATCGTTTAAAATTAGATAGAAGAGCTGTAGCTTGTGCTTTGACTTTTGGCTTACAAGCCCCTTAT TTAGCCTTACCTGTTGGTTTTGGATTGATTTTTCAAACAACTATTTTAGAGCAACTCAAGCTTAATGGTATTCAAACAAA TTTAGCCCAAATTACTAGTGTGATGTGGATTGCAGGGTTAGCTATGCTATTTGGCTTATTGATTGCGGTATTAGTTCTAT ATAGAAAGCCTAGAATTTATATAGAAAAAACCTTTGATTTAGAAGATTATTCTAAGCTCACACTCAACTACCATGATTAT TTAACGCTTGTAGGCATTGTGATTGCCTTTTTGGTGCAAATTATTACTGACTCGATGCCTTTAGCAGCATTTTTAGCTCT TGTGGTTATGTTAATAGGGCGCAGTATTAAGTGGGACGAAACCGACCAACTAATGGATGATAGCGTCAAAATGATGGCTT TTATTGCCTTTGTTATGTTGGTAGCAAGTGGTTTTGGGGAAGTTTTACAAAAAGTGCATGCTACTCAAGATTTAGTCAAT TCCATTGCCTCTATTATTCAAGGAAAGTTAGTGGGAGCAATCTTAATGCTTTTAGCTGGACTTTTTATCACTATGGGGAT AGGAACTTCTTTTGGCACTATTCCTATTATTGCAGTTTTTTATTGTCCTTTATGTCAAAGTCTTGGTTTTGGGATAGAGG CTACGATTTTACTTATAGGCACAGCAGCTGCACTTGGAGATGCGGGCTCACCTGCAAGTGATAGCACCATGGGGCCAACT TGTGGCTTGAATGCAGACAATCAGCATAACCATATTTATGACACTTGTGTGCCAACCTTTTTAGTTTATAATCTCTCATT AATCATTTTTGGAGTAGTAGGGGCGTTACTATTAGGCTAA Protein sequence : MLESSAISIWVNPAFIAIIVMCVLSLLRLNIMLSMISATLIAGLMGGLSLTESFNVMIDGMKGNLKIALSYILLGALAVA IAKSNLIKIALSKLVCFMDQKRMIFCFVIAFIACFSQNLIPVHIAFIPILIPPLLHVMNRLKLDRRAVACALTFGLQAPY LALPVGFGLIFQTTILEQLKLNGIQTNLAQITSVMWIAGLAMLFGLLIAVLVLYRKPRIYIEKTFDLEDYSKLTLNYHDY LTLVGIVIAFLVQIITDSMPLAAFLALVVMLIGRSIKWDETDQLMDDSVKMMAFIAFVMLVASGFGEVLQKVHATQDLVN SIASIIQGKLVGAILMLLAGLFITMGIGTSFGTIPIIAVFYCPLCQSLGFGIEATILLIGTAAALGDAGSPASDSTMGPT CGLNADNQHNHIYDTCVPTFLVYNLSLIIFGVVGALLLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| CpI19_1481 | YP_005685924.1 | Na+/H+ antiporter NhaC | Not tested | PiCp 5 | Protein | 7e-63 | 43 |
| CpC231_1474 | YP_005683838.1 | Na+/H+ antiporter NhaC | Not tested | PiCp 5 | Protein | 7e-63 | 43 |
| Cp1002_1472 | YP_005681739.1 | Na+/H+ antiporter NhaC | Not tested | PiCp 5 | Protein | 9e-63 | 42 |
| cpfrc_01481 | YP_003783881.1 | hypothetical protein | Not tested | PiCp 5 | Protein | 9e-63 | 42 |
| BJAB07104_00352 | YP_008207817.1 | putative permease | Not tested | AbaR25 | Protein | 4e-59 | 41 |
| BJAB0868_00356 | YP_008211682.1 | putative permease | Not tested | AbaR26 | Protein | 4e-59 | 41 |
