|
Name : ureB (HCD_02710) Accession : YP_006220770.1 Strain : Helicobacter cetorum MIT 99-5656 Genome accession: NC_017735 Putative virulence/resistance : Virulence Product : urease subunit beta Function : - COG functional category : - COG ID : - EC number : 3.5.1.5 Position : 570978 - 572687 bp Length : 1710 bp Strand : + Note : COG0804 Urea amidohydrolase (urease) alpha subunit DNA sequence : ATGAAAATGAAAAAACTTGATTATGTCAATACTTATGGGCCTACTAAGGGGGATAAAGTAAGACTCGGCGATACTGAGCT TTGGGCAGAAGTTGAGCATGACTATACCATTTATGGCGAAGAGTTAAAATTTGGTGCAGGCAAGACCATTAGAGAAGGCA TGGGGCAATCTAATAGCCATGATGAAAACACTTTGGATTTAGTGATTACAAACGCTTTGATTATTGACTACACCGGCATT TACAAAGCTGATATTGGGATTAAAAATGGCAAAATCCACGGCATTGGAAAAGCTGGGAATAAAGATATGCAAGATGGCGT TAGCCCTAATTTAGTCGTAGGTGTAGGCACAGAAGCATTAGCGGGAGAAGGCATGATTATTACAGCTGGTGGGATTGATA GCCACACGCATTTCTTAAGCCCGCAACAATTTCCAACAGCCCTAGCTAATGGTGTAACCACAATGTTTGGTGGCGGAACA GGTCCAGTTGATGGCACAAATGCTACAACCATTACTCCAGGTGAGTGGAATATCCACAGAATGCTAAGAGCCGCTGAAGA ATACGCTATGAATGTAGGGTTCTTAGGAAAAGGAAATTCTTCTAGCAAACAGCAATTAGTGGAGCAAGTCCATGCAGGGG TTATTGGTTTTAAATTACACGAAGACTGGGGCACTACACCAAGCGCGATTGATACTTGCTTAAGTATTGCTGATGAGTAT GATGTGCAAGTGTGTATCCATACAGACACCGTGAATGAAGCTGGGTATGTGAATGACACGCTCAATGCGATGAACGGACG CGCCATTCATGCATACCACATTGAAGGGGCAGGCGGAGGACATAGCCCAGATGTTATCACTATGGCTGGTGAGGAAAACA TCTTACCAAGTTCAACTACCCCAACCATTCCTTATACCATAAATACGGTTGCAGAACACTTAGACATGCTAATGACCTGC CACCACTTGGATAAAAAAATTAGAGAGGATTTACAATTTTCACAAAGTCGTATCCGCCCAGGTAGCATTGCGGCTGAAGA TGTCTTGCATGACAATGGCATGATTGCTATGACAAGTTCTGATTCTCAAGCTATGGGAAGAGCGGGCGAAGTCGTGCCTA GAACTTGGCAAACCGCTGATAAAAACAAAAAAGAGTTTGGTCCTTTAAAAGAAGACGCTAAAAATGGGAATGATAATTTC CGCATTAAACGCTATATTTCTAAATACACTATAAATCCTGCTATTACGCATGGCGTGAGTGAATACATCGGCTCTGTAGA AACAGGAAAAATCGCTGATTTAGTCGTGTGGAATCCAGCCTTTTTTGGTGTGAAGCCTAAAATCATCATTAAAGGTGGCT TGGTTGTATTCTCTGAAATGGGCGATAGCAATGCATCTGTGCCAACCCCTCAACCTGTATATTACAGAGAAATGTTCGGT CATCATGGAAAGGCTAAATTTGATACTAGCATTACTTTTGTCAATAAGACTGCCTATGAAAATGGCATTAAAGAAAAGCT TGGCTTAGAAAGAAAAGTATTGCCCATTAAAAATTGTCGCAATGTAACTAAGAAAGACTTTAAGTTTAATAACACAACAG GGAAACTCAGCGTAGACCCAGAGAGCTTTGAAGTCTTCTTAGATGGTAAGCTTTGTTCTTCTAAACCAGCGAGCGAATTA CCTTTAGCCCAACGCTATACTTTCTTCTAA Protein sequence : MKMKKLDYVNTYGPTKGDKVRLGDTELWAEVEHDYTIYGEELKFGAGKTIREGMGQSNSHDENTLDLVITNALIIDYTGI YKADIGIKNGKIHGIGKAGNKDMQDGVSPNLVVGVGTEALAGEGMIITAGGIDSHTHFLSPQQFPTALANGVTTMFGGGT GPVDGTNATTITPGEWNIHRMLRAAEEYAMNVGFLGKGNSSSKQQLVEQVHAGVIGFKLHEDWGTTPSAIDTCLSIADEY DVQVCIHTDTVNEAGYVNDTLNAMNGRAIHAYHIEGAGGGHSPDVITMAGEENILPSSTTPTIPYTINTVAEHLDMLMTC HHLDKKIREDLQFSQSRIRPGSIAAEDVLHDNGMIAMTSSDSQAMGRAGEVVPRTWQTADKNKKEFGPLKEDAKNGNDNF RIKRYISKYTINPAITHGVSEYIGSVETGKIADLVVWNPAFFGVKPKIIIKGGLVVFSEMGDSNASVPTPQPVYYREMFG HHGKAKFDTSITFVNKTAYENGIKEKLGLERKVLPIKNCRNVTKKDFKFNNTTGKLSVDPESFEVFLDGKLCSSKPASEL PLAQRYTFF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 2e-147 | 58 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 2e-147 | 58 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-142 | 57 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-142 | 57 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-142 | 57 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 2e-142 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureB | YP_006220770.1 | urease subunit beta | VFG0270 | Protein | 0.0 | 72 |
