Gene Information

Name : HPB14_04120 (HPB14_04120)
Accession : YP_006219537.1
Strain : Helicobacter pylori HUP-B14
Genome accession: NC_017733
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagN
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 851584 - 852504 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGCATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTAGTTGTTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTGCCGAGTGAATACAAAGAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACATTCCATCAAAGACATGACG
ATGAAGAAGTTACAGAAGAGGAAAAAAAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCAAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTGTTCAAAAAAAAGCGGCTAAGCACAGAGG
ATTGCAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGACAACCCTAATGGCAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTAAAACCTACTGCTCCGCTTGTGCCTAAT
GAGTGGAGAACGCCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGACATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGC
GCTATTTGTGAGAAGAGAAGAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAGAAAACGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGTATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVVYGGLNAINTALLPSEYKELVALGFKKIKTFHQRHDDEEVTEEEKKFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANPLNDNPNGNSSTETKSNKDDNFDEMINKVNEAFVKPTAPLVPN
EWRTPEIEIIINECIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRRKEMEQENNYQDTTNASEFGATDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 1e-116 97
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 96
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-114 96
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 2e-118 96
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-114 96
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 96
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-116 96
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 96
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-114 96
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-114 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-114 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-114 96
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-114 96
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-114 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 9e-118 96
cagN AAF80207.2 CagN Virulence cag PAI Protein 1e-118 95
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-119 95
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-119 95
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 9e-120 95
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-118 95
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 8e-118 95
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 8e-119 95
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 2e-118 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 9e-117 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPB14_04120 YP_006219537.1 cag pathogenicity island protein CagN VFG0297 Protein 4e-120 95