|
Name : HPB14_01740 (HPB14_01740) Accession : YP_006219079.1 Strain : Helicobacter pylori HUP-B14 Genome accession: NC_017733 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : - COG ID : - EC number : 2.2.1.1 Position : 358275 - 360200 bp Length : 1926 bp Strand : - Note : COG0021 Transketolase DNA sequence : ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCGAACACGCTTCGTTTTTTATGTGCAGACATGATAGA TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACCTAAACCTTA ACCCCACCAACCCTAAATGGCTCAATAGGGACAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTGGCGTATAGTTTG TTGCATTTGTGGGGCTTTGATTTGAGTTTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC CGAATTGCACCACACCGAAGGCATTGAGATCACCACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA TGGCGAGTCAATACGCTCAAACCCTTTTAGATAAAGAAGCGATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTTCGCCTTGATAACCTCATTGTGATTTATGATAG TAATCAGATAAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAGGTTAAAACGCGTTTTTTAGCACAAAATTGGG AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCACAACGCTTTAGAAGAAGCCAAAAAATCCCCTAAACCCACG CTTTTAATCGCTCATACGATCATTGGCAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA TAAAGAAGTGTTGAAACAATCCAAAGAAAACGCTCAAATCAATCCTAATGAAAGCTTTATAATCAGCCCAAAAAACAAAA TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAACAAAAGAA AAGATCCATGCGTTAAAGAATTTTGATTTTAACGCCATTAATTACCCCGCCTTTAAAAAAGGCGAATCTCTAGCCACGAG AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGAGGGAGTGCGGATTTAGCCCCAT CCAATAACACGCATTTGAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTGGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTATTT AATGCCCAGCATTCGTTTGAGCGCTTTAATGAAATTAAAAGCCCTTTTTATCTTCACGCATGACAGCATTGGCGTGGGCG AAGATGGGGCGACGCACCAACCCATAGAACAATTGAGCCATTTACGCGCTTTGCCTAATTTCTATGCTTTCAGGCCTAGC GATGCCTTTGAAAATAAGGCTTGCATGCAAGTAGCGTTAAGTTTGAACGCTCCTAGCGCTTTTATTTTATCGCGCCAGAA TTTGCCCGTGCTAGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACACCATTCTAAAGATCCCATTA TCACGCTTGTTGCGAGCGGGAGCGAAGTGTCTTTAGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT CAAGTGGTGAGTGCACCTTGCTTTGATTTGTTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTCTTTAAGGGTAAAGT CTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAACATCACCACTCAAGCGAAAAGGTTGCTCAAC GCATGA Protein sequence : MQLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQTLLDKEAISHKVYCLCGDGD LQEGISYESASLAGHLRLDNLIVIYDSNQISIEGAINISFSEQVKTRFLAQNWEVLECDGHDYQAIHNALEEAKKSPKPT LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKTKE KIHALKNFDFNAINYPAFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTHLKHSGDFPLGQNLHFGIREHAM GAITNALAAYGLLVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS DAFENKACMQVALSLNAPSAFILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAKILERENIPT QVVSAPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN A |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 2e-96 | 42 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 9e-86 | 41 |
