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Name : lysS (HPB14_00880) Accession : YP_006218914.1 Strain : Helicobacter pylori HUP-B14 Genome accession: NC_017733 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 177862 - 179367 bp Length : 1506 bp Strand : + Note : COG1190 Lysyl-tRNA synthetase (class II) DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAATAGCTTGAGAGAAGAAGGGAAAAACCCTTATCAAAA TGGCTTGAAACGAAGCCTCACCAACGCCGCTTTTTTAGAAAAATACGCTTATGTTAAGGGTTTAGAAGAGCCTAAAGACA AAGAAAAATGCGAAAGTATTGTAGGGAGGGTCAAGCTTTTGCGTTTAATGGGTAAGGCATGCTTTATTAAAATTGAAGAT GAAAGCGCGATTTTGCAAGCTTATGTTTCGCAAAATGAATTGAACGATGAATTTAAAAGCCTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGTTTCCCTTTTGCTACCAAAACCGGTGAATTGAGCGTTCATGCCCTAGAATTTCACA TTTTAAGCAAAACCATTGTGCCTTTGCCTGAAAAATTTCATGGATTAAGCGATATAGAATTGCGTTACCGCCAGCGCTAT TTGGATTTGATCGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAACGCAGTTTGATTGTTTCTAGCGTGCGGAAATTTTT TGAAATGGAAGGGTTTTTAGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTTATCA CTTACCATAACGCTTTGGAGGTGGAGAGGTATTTAAGAATCGCTCCAGAATTATACCTCAAACGCTTGATTGTGGGGGGG TTTGAAGCGGTGTTTGAAATCAATCGTAATTTCAGAAATGAGGGCATGGATCACAGCCATAATCCCGAATTTACGATGAT TGAGTTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAGGCTATTTGACTACTTGCTAAAGACTT TAAATTTAGATTCAAAAATCATTTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCCTATTTGGACGCT TTAGAAACAATAGGGGGCATTAGTAGGGGTATTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCAAGGCAT CAAAGTAGAGCCAAACCTCACTCATGGCAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCATAAGCTCATTAACC CCACTTTTGTAACCGAATATCCCATTGAGATTAGCCCTTTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTCATTGCAGGTAAAGAAATCGCTAATGGCTTTAGCGAATTGAATGACCCTTTAGATCAATTAGAGCGCTT TAAAAATCAAGTGGCTGAAAAAGAAAAAGGCGATGAAGAAGCTCAATACATGGATGAAGATTATGTGTGGGCTCTAGCCC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGACCGATTAGTGATGTTACTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATATTGAGAGTGGAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYQNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKIED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDA LETIGGISRGILEKEDRLLAYLLEQGIKVEPNLTHGKLLAEAFDHFVEHKLINPTFVTEYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNIESGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-105 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_006218914.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 6e-106 | 51 |
