Gene Information

Name : S70_12850 (S70_12850)
Accession : YP_006217104.1
Strain : Providencia stuartii MRSN 2154
Genome accession: NC_017731
Putative virulence/resistance : Virulence
Product : pili assembly chaperone
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2766045 - 2766773 bp
Length : 729 bp
Strand : +
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGAATAAATTATATAAAGGCACTGTTTGCCTTTCATTCGTGTTTATCAGTGTGCAAACCGCATTTGCTGCAATCAATAT
CGATCGCACACGGATCATTTTTCCCGGTCAGGATAAATCAGTCAGTTTAGTTATTAATAACCAAAGTAAAACATTACCTT
ATCTTGCTCAGTCATGGATGGAAGATGATAAGGGAAATAAGATTGCAGAGCCTTTTACGGTGCTGCCTCCGATGCAGCGA
GTTGAGCCAAATACGAAAAACCAAATAAAAATTATTAAAACGGAGGCAATAGATAAATTGCCCCAAGACAGAGAATCACT
ATTTTATCTGAATGTCCGAGAGATCCCGCCAGTTTCAAATAAAGAAAACGTGGTGCAAATTGCAATTCAAAGTCGCTTAA
AAATGTTCTATCGACCAGCTCAAATTGAAAATAATAGCGATAAAGTTTGGGCGAAAGAATTGAAATATACTCATTCCGGT
AACCGTTTATTGATTGAAAACCCAACTAAATATTATGTGACTTTGGGGTATTTAAGTAGCAACACGACCAATAATTTTCC
TGATTTTGAAAGCGTTATGATTGCTCCAATGTCAAAGGAAAGTGTCACAGTTCCTACAACGCCATTTAAGCAATTATATA
CAGGTTATATGGATGATTATGGTGGTATGAAAATGTTGACTTACCAATGTGCTGCGTCTGTTTGTCAGTTGGCTAACGAA
AGTAAATAG

Protein sequence : 
MNKLYKGTVCLSFVFISVQTAFAAINIDRTRIIFPGQDKSVSLVINNQSKTLPYLAQSWMEDDKGNKIAEPFTVLPPMQR
VEPNTKNQIKIIKTEAIDKLPQDRESLFYLNVREIPPVSNKENVVQIAIQSRLKMFYRPAQIENNSDKVWAKELKYTHSG
NRLLIENPTKYYVTLGYLSSNTTNNFPDFESVMIAPMSKESVTVPTTPFKQLYTGYMDDYGGMKMLTYQCAASVCQLANE
SK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 4e-42 45
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 3e-48 43
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 6e-48 43
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 5e-48 43
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 5e-48 43
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 5e-48 43
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 4e-48 43
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 1e-49 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S70_12850 YP_006217104.1 pili assembly chaperone VFG0885 Protein 2e-42 45
S70_12850 YP_006217104.1 pili assembly chaperone VFG1547 Protein 2e-48 43
S70_12850 YP_006217104.1 pili assembly chaperone VFG0896 Protein 2e-48 43
S70_12850 YP_006217104.1 pili assembly chaperone VFG0455 Protein 2e-26 41