Gene Information

Name : S70_12605 (S70_12605)
Accession : YP_006217058.1
Strain : Providencia stuartii MRSN 2154
Genome accession: NC_017731
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2706551 - 2709187 bp
Length : 2637 bp
Strand : +
Note : COG3188 P pilus assembly protein, porin PapC

DNA sequence :
ATGTCATATCTGGCATCTGGAAAAGAGCCATTAATTTTGGAGAAGAAAACGTTTTTTGGCAATCTACCCGAGCGCCATTT
TCCCTTAATTCCATTGGCACTCTTTATTGGTGTCTGCCTATACCCTACTTGGGCTGAGGCAGAATTATACTTTAACCCAC
GCTTTTTGTCTGATGATCCTTCTGCTGTTGCTGACCTGTCTGCTTTTGAACAAGGTCAAGAAGTACCTGAAGGCACTTAT
CGTGTTGATGTGTATCTCAATGATGGATATTTATCGATTCGAGATGTTCATTTTACTATCGATAAGAGTAGCAAAGAATT
GTCGCCATGTTTAACGCTTGGTGAGTTAGCTAAAATGGGTGTGAAGACATTGGCCATTCCAAATGTCGAGACAATCTCTA
AGGACACTTGTCAGCCTTTAAATACATTGATTGCTGATTCAACATCAAAATTTGATGTTGGCTTACAACGTTTATATATC
ACTGTGCCTCAAGTGTATATGAGGGATAGAGCGCGAGACTTTATTCCTACTGAGTATTGGGACTCTGGTATTACTGCAGG
TCTTTTAAATTATAGCCTCACGGGAAGTCGCGCACGTAACCAAAATGGTACTCATAGCAGCTATACCTACCTGAATTTAC
AGAGTGGATTAAACCTTGGGCCATGGCGCTTGCGCGATAACTCCACATGGAGTCACAGTAGCGGTAAGACTAACAGTGAA
ACGCGTTGGGAGCATATCAATACTTATTTAGAGCGCGGTATCAATGAATTCCGCTCACGCTTAACGGTAGGTGATAGTTA
CACACTTGGTGATATTTTCGACAGTTTTAACTTCCGTGGTATTCAATTAGCTTCCGACGATAATATGCTACCGGAAAGCG
AAAAGGGTTTTGCGCCTGTGATCCGTGGTATTGCACGAGGCACTGCTGACGTTTCAATTAAACAAAATGGCTATGAAATT
TACCGGAATACTTTTCCGCCAGGGCCTTTTGTTATTAATGATTTATATGCGGCAGGGAACAGTGGTGATCTCCAAGTTAC
CATTACAGAGGCGGATGGTTCAATACAAAGCTTCACGGTGCCTTATTCTTCGGTGCCTTTGCTACAGCGTGAAGGGCATA
CTAAATATGCGGTTACAGTAGGTGACTACCGTTCAGGAAATGGGCAACAAGAAAAGCCGACCTTTGTACAAGGTACCATA
ATGCGTGGTTTGTCATATGGTTGGACGCTATATGGTGGAACGCAACTTGCAAATCGCTACCAATCTTTCAACGCTGGTAT
TGGTAAAAATATTGGTGTGTTTGGGGCATTATCCGTCGATATTACACAAGCTAATGCCAAGCTACCTGATGATAGTAATC
ATCAAGGACAATCTATTCGCTTCTTATATAACAAGTCACTGAATGAAACGGGAACAATTATTCAGTTAGCTGGTTATCGT
TATTCAACTAAGGGTTATTACTCATTCGCGGATACCACCTATAAACGAATGGATGGCTATAACCTTGCAACACAAGATGG
TGTTATACAGGTTACGCCGAAATTCACCGACTACTACAACTTAGCCTATAACAAACGCGAAAAAATCCAATTAAGTTTGA
CTCAACAATTGGGTGAACAATCGACGTTATATGTGACGGGTAGTCACGAAACATATTGGAATACTAATAAATCAGATAAG
CAATTACAGGTTGGTATCAATACGTTAATCGAAGGGATCAATTGGGGCTTAAGTTACAGCCTATCGAAAAACTCGTGGCA
GGATGCCAACGACCAAATGTTGGCCTTGAATGTGAATATTCCATTCAGTCATTGGCTGCGTTCGGATAGCCAATCTATCT
GGCGTAATGCAAGTGCCAGCTATAACGCTTCACATGATCTGAAAGGCCGAGTCACCAATACGGCTGGTATCTATGGAACA
TTATTGGATGACAATAATTTAAGTTATAGCGTGCAAACAGGTTATGCCGGGGGTGGGGAAGGAAACTCTTCTGCAACAGG
CTATACCTCACTCAACTATCGCGGTACTTATGGTAATGCCAACGTGGGCTATAGCTATACCAATGACTTAAGCCAGATGT
ATTACGGTTTAAGTGGAGGGATTTTAGCGCATGCTAATGGGGTCACGTTAAGCCAGCCAATGAATGATACGGTGGTTTTA
ATTAAAGCGCCGGGTGCTGGGAATGTCAAAGTTGAAAACCAAACCGGTGTTACAACGGATTGGCGTGGTTATGCCGTTTT
GCCCTATGCCTCTGATTACCGTGAAAACCGAGTCGCTCTTAATACCAATACATTAGCTAATAATGTTGATCTTGAAGATC
CCGTCGTGAGTGTTGTACCGACTCGAGGTGCAGTAGTGCGTGCGGATTTCCATCCTAAAGTAGGTGTGAAAGTACTAATG
ACACTCATGAGACAGGGCAAACCTGTGCCATTTGGTGCAGTGGTAACCTCAAAAGGCAGTAATGGTGGCAGTATTGTTGC
CGATGATGGGCTGGTTTATCTAACAGGGTTGCCACTGGCAGGGCAATTGGTTGCTCGCTGGGGAGATAGCCCAGATGCAC
AATGCCAAGTCAACTACACACTGCCTGAGCAAAGCCGGCAGGAAATACTCAGTAAGCATCGTGTAGAGTGCCTCTAA

Protein sequence :
MSYLASGKEPLILEKKTFFGNLPERHFPLIPLALFIGVCLYPTWAEAELYFNPRFLSDDPSAVADLSAFEQGQEVPEGTY
RVDVYLNDGYLSIRDVHFTIDKSSKELSPCLTLGELAKMGVKTLAIPNVETISKDTCQPLNTLIADSTSKFDVGLQRLYI
TVPQVYMRDRARDFIPTEYWDSGITAGLLNYSLTGSRARNQNGTHSSYTYLNLQSGLNLGPWRLRDNSTWSHSSGKTNSE
TRWEHINTYLERGINEFRSRLTVGDSYTLGDIFDSFNFRGIQLASDDNMLPESEKGFAPVIRGIARGTADVSIKQNGYEI
YRNTFPPGPFVINDLYAAGNSGDLQVTITEADGSIQSFTVPYSSVPLLQREGHTKYAVTVGDYRSGNGQQEKPTFVQGTI
MRGLSYGWTLYGGTQLANRYQSFNAGIGKNIGVFGALSVDITQANAKLPDDSNHQGQSIRFLYNKSLNETGTIIQLAGYR
YSTKGYYSFADTTYKRMDGYNLATQDGVIQVTPKFTDYYNLAYNKREKIQLSLTQQLGEQSTLYVTGSHETYWNTNKSDK
QLQVGINTLIEGINWGLSYSLSKNSWQDANDQMLALNVNIPFSHWLRSDSQSIWRNASASYNASHDLKGRVTNTAGIYGT
LLDDNNLSYSVQTGYAGGGEGNSSATGYTSLNYRGTYGNANVGYSYTNDLSQMYYGLSGGILAHANGVTLSQPMNDTVVL
IKAPGAGNVKVENQTGVTTDWRGYAVLPYASDYRENRVALNTNTLANNVDLEDPVVSVVPTRGAVVRADFHPKVGVKVLM
TLMRQGKPVPFGAVVTSKGSNGGSIVADDGLVYLTGLPLAGQLVARWGDSPDAQCQVNYTLPEQSRQEILSKHRVECL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 67
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S70_12605 YP_006217058.1 hypothetical protein VFG0876 Protein 0.0 67
S70_12605 YP_006217058.1 hypothetical protein VFG1645 Protein 0.0 62
S70_12605 YP_006217058.1 hypothetical protein VFG0912 Protein 0.0 62
S70_12605 YP_006217058.1 hypothetical protein VFG0446 Protein 4e-180 46
S70_12605 YP_006217058.1 hypothetical protein VFG0454 Protein 1e-166 42