Gene Information

Name : spaP (S70_09795)
Accession : YP_006216510.1
Strain : Providencia stuartii MRSN 2154
Genome accession: NC_017731
Putative virulence/resistance : Virulence
Product : type III secretion system protein SpaP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2097989 - 2098627 bp
Length : 639 bp
Strand : -
Note : COG4790 Type III secretory pathway, component EscR

DNA sequence : 
ATGTTGGCACTGGTTTCACTGGCCACATTACTGCCGTTTATTATTGCGGCAGGCACCTGTTATTTAAAAATATCGATCGT
ATTAATCATGGTACGTAATGCCATGGGGGTTCAACAGGTTCCCTCAACCATGGCTTTAAATGGCATCGCGATGTTGTTAT
CCCTTTTTGTCATGATGCCAGTGGTACAAGACATTAGCCATTATATGCGTGAAGAGAAGGTGGATTTTGGCAATGTGGAA
TCGGTCGATAATTTTGTTGATGGCGGCTTAGGACGCTATAAGGCCTATTTACAAAAATATTCTGATCCTGAACTGGTGCA
ATTTTTCGAATCAGTACAACAGCAGCGAAATGAAGAGCCAATGGACGCCGAAGCGCATTCAGCCACACTATTTTCACTAT
TACCTGCCTATGCACTGAGTGAAGTTAAGTCAGCATTCGAAATTGGTTTTTATATCTATTTACCCTTTGTTGTGATTGAT
CTGGTGATATCTAGCATTCTGTTAGCTCTCGGTATGATGATGATGAGCCCAGTCACTATTTCGGTGCCAGTTAAATTGAT
CCTGTTTGTCGCTATTGATGGATGGTCACTGATTTCGAAAGGGTTAGTGATGCAATATCTTGAATTGGCACAGCAATAA

Protein sequence : 
MLALVSLATLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIAMLLSLFVMMPVVQDISHYMREEKVDFGNVE
SVDNFVDGGLGRYKAYLQKYSDPELVQFFESVQQQRNEEPMDAEAHSATLFSLLPAYALSEVKSAFEIGFYIYLPFVVID
LVISSILLALGMMMMSPVTISVPVKLILFVAIDGWSLISKGLVMQYLELAQQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 1e-66 63
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 5e-65 62
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-58 60
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-58 60
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 4e-58 59
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-58 59
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 2e-63 58
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 4e-61 55
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-43 45
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 6e-33 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 6e-33 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-43 43
escR AAK26700.1 EscR Virulence LEE Protein 4e-43 43
escR AAL57527.1 EscR Virulence LEE Protein 4e-43 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-43 43
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-43 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-43 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-33 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-33 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-33 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-32 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 7e-34 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 9e-34 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-43 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-43 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-43 42
escR AAC38369.1 EscR Virulence LEE Protein 2e-42 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-33 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-43 42
escR AAC31528.1 L0049 Virulence LEE Protein 4e-43 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-33 42
unnamed AAL06354.1 EscR Virulence LEE Protein 9e-42 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-34 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-32 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-39 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 9e-37 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-39 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spaP YP_006216510.1 type III secretion system protein SpaP VFG1773 Protein 2e-84 80
spaP YP_006216510.1 type III secretion system protein SpaP VFG0551 Protein 5e-59 60
spaP YP_006216510.1 type III secretion system protein SpaP VFG2455 Protein 8e-65 60
spaP YP_006216510.1 type III secretion system protein SpaP VFG1012 Protein 3e-59 57
spaP YP_006216510.1 type III secretion system protein SpaP VFG0394 Protein 7e-43 48
spaP YP_006216510.1 type III secretion system protein SpaP VFG0188 Protein 8e-43 46
spaP YP_006216510.1 type III secretion system protein SpaP VFG0044 Protein 2e-38 43
spaP YP_006216510.1 type III secretion system protein SpaP VFG0827 Protein 2e-43 42
spaP YP_006216510.1 type III secretion system protein SpaP VFG0715 Protein 1e-42 42