|
Name : S70_07580 (S70_07580) Accession : YP_006216076.1 Strain : Providencia stuartii MRSN 2154 Genome accession: NC_017731 Putative virulence/resistance : Virulence Product : fimbrial outer membrane usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 1593571 - 1596009 bp Length : 2439 bp Strand : - Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGGTATCGATGCTTTGTTTGACTAAAGTGTCTTACGCTGTAGAGTTTAATACCGATATACTTGATAGCGAAGATAAAGC TAACATTGACGTCTCAAGATTTAAAAATCCTAATTTCATTCTACCGGGAACTTATTTCTTTAACATCATTATAAATAGTA CTCAATTGACGCAGTCTACAGTTCCTATTCAAATTATTGGTGATAGTACAGATGCCTCTGTCAGTGATGTGTGCATTGAT AAGTCATACATTAATAGCTTAGGTATTAAAGAAAAGTATATTGACCAATTAACCTATTGGAATGATGGGGCGTGTATTGA TTTTTCGGCATTAAAAGGGGTCAGTGTTGTCCCTAATTTATCCGAAGGCACTGTGACGCTGAATATACCACAATTATATC TCGAATATATGGATAATAACTGGTTACCGAAATCATTGTGGGATGAAGGTATCAGTGGGTTGTTATTAGACTATAATGCA AACTATCAATATAGTGATCGGGATAGCTTAAAGAATCAGATTGCTTCCATTAGTGGATATCTTGGCGCCAATATGGGAGC ATGGCGCCTACGTAGTGAATACTATGGTAATTATCAAAGACAAAATTCCAATGGTAAAACATCGACAATACGTAATTTTT TATTTAATGCCATTTATTTATATAGAAATATAAAAGCGCTAGATTCTAAATTAGTGATTGGTGAGAGTACAACCCCCTCA CAAATTTTAGAGCCAATTAAATTTACAGGATTATCATTATTCACTAATGATTCCATGTTACCACCAAGGTTACGTGGATA TGCACCAGAGATAACAGGTATAGCTAAAACGAATGCACGAGTTGTCATTACACAACTTGGACGTGTATTGCACGATGGAA ATGTACCTGCTGGACCATTTAAGATTCAATCATTAAACAGTGGAACTTGTGGTGAGCTTAACGTAAAAATTATTGAGCAG GATGGTACTGAACAACAATTTACAGTGAGTAGTTCGAATGTTCCGTATTTAACGCGTCCGGGCACCACACGATATAACGT ATCTGCGGGGCAACCGACAAAAGTGGATCATTCGGTATATCGTGGTGTGTTCTTTTTTAGAGCAGAGGCTTCTCACGGTT TAAATAACAATTGGTCGTTAAACGGTGCAACAGATATTAGCCAAGGCTATCAACAGGTTTCATTAGGTGTTGGTCGTTTT ATGAATCGGTTTGGTGCACTTTCTGTGAACATTACGCGTTCGTTCGCACAATTAGATCATGATAGTCCTTCAGGTAACTC ATACAGTGTTAATTACTCGAAAACATTCGATGACTACGATATGGACTTAACTTTTGCAGGGTATCGATTTACTGATAGAA AATACTATACATTATCCCAATATTTAGATTTAAGAGATGATAGGGTTGTTGATAGCGAAAAAGAACGTTATCAAATAACG CTTTCTAAGCGCTTAGGTGAGTTTAATATAAACTTAAATTATCAATTGCAACAATATTGGGATAGAGGTCAAACTCATCA ATATGGTCTTAATATAGGTAAAAGTATCAATCTTCCTTACTTAAAACTACAGGGAGGAAGCATTACATTATCAGCAAATA GAAGCTATTATCAAAATAAATATGATGACCAAATTAGCTTAATGCTTTCTGTGCCATTTGGTAAGCAGTTTTATACTTTT GATACAATGAAATATAACGATACTTATAATTCGCGTGTTTCAGTGTCTAATTTAACAGATGATAATGACTACTATAATAT AAGTGCATCGACAAGCTACGGTAAAGATGCCAAAAAACAAAGTACACTTGCTGGAATGTATGATTTACCGACACGCTATG CATCTATCAATAGTAATATGTCTATCTCGGATAAAGGGGATAGTAGTTTAGGCTTAGGACTCAATGGTGGGGTGACATTA ACGCAACATGGTGTAGCTTTACACAGTTCATCATATTCTTCTGCCTCAAGGTTAATGATAGACACAAATAATATCGCGGA TGTTCCTTTAAATAATGGTACAACCGTGACGAATGGATTAGGTATTGGCGTTATTCCTAACATGACTAACTATTATAAAA ATAGTTACAATGTGGATATGAGTAAATTACCAGATAATATTGAATCATCAAATACAATTTATGATATCGCCTTAACAGAA GGCGCTATTGGATATAGAAAAATAAGTGCAGATAAAGGTTTTAAATTATTTGCAACGATTAAAATGTCTGATAACTCAGG GGCACCACCATTTGGTTCTCAGGTATTAAATGAAAAAGGGAGAGAGGTCGGGATTGTAAGCGATAATGGATTAGTTTGGT TAACAGCGGTTCAATCAGAAGAAAAGTTAAATATCAACTGGTCTAATAAAATACAATGCAGTACGACCTTACCAACCTTA GATAATGTAAATCAAATTATTTTAATTTGTGAGAAATAG Protein sequence : MVSMLCLTKVSYAVEFNTDILDSEDKANIDVSRFKNPNFILPGTYFFNIIINSTQLTQSTVPIQIIGDSTDASVSDVCID KSYINSLGIKEKYIDQLTYWNDGACIDFSALKGVSVVPNLSEGTVTLNIPQLYLEYMDNNWLPKSLWDEGISGLLLDYNA NYQYSDRDSLKNQIASISGYLGANMGAWRLRSEYYGNYQRQNSNGKTSTIRNFLFNAIYLYRNIKALDSKLVIGESTTPS QILEPIKFTGLSLFTNDSMLPPRLRGYAPEITGIAKTNARVVITQLGRVLHDGNVPAGPFKIQSLNSGTCGELNVKIIEQ DGTEQQFTVSSSNVPYLTRPGTTRYNVSAGQPTKVDHSVYRGVFFFRAEASHGLNNNWSLNGATDISQGYQQVSLGVGRF MNRFGALSVNITRSFAQLDHDSPSGNSYSVNYSKTFDDYDMDLTFAGYRFTDRKYYTLSQYLDLRDDRVVDSEKERYQIT LSKRLGEFNINLNYQLQQYWDRGQTHQYGLNIGKSINLPYLKLQGGSITLSANRSYYQNKYDDQISLMLSVPFGKQFYTF DTMKYNDTYNSRVSVSNLTDDNDYYNISASTSYGKDAKKQSTLAGMYDLPTRYASINSNMSISDKGDSSLGLGLNGGVTL TQHGVALHSSSYSSASRLMIDTNNIADVPLNNGTTVTNGLGIGVIPNMTNYYKNSYNVDMSKLPDNIESSNTIYDIALTE GAIGYRKISADKGFKLFATIKMSDNSGAPPFGSQVLNEKGREVGIVSDNGLVWLTAVQSEEKLNINWSNKIQCSTTLPTL DNVNQIILICEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 1e-146 | 41 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 9e-147 | 41 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 1e-146 | 41 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-146 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| S70_07580 | YP_006216076.1 | fimbrial outer membrane usher protein | VFG1548 | Protein | 8e-147 | 41 |
| S70_07580 | YP_006216076.1 | fimbrial outer membrane usher protein | VFG0884 | Protein | 4e-147 | 41 |
| S70_07580 | YP_006216076.1 | fimbrial outer membrane usher protein | VFG0895 | Protein | 6e-147 | 41 |
