Gene Information

Name : S70_06120 (S70_06120)
Accession : YP_006215787.1
Strain : Providencia stuartii MRSN 2154
Genome accession: NC_017731
Putative virulence/resistance : Unknown
Product : Prophage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1276017 - 1277282 bp
Length : 1266 bp
Strand : +
Note : COG0582 Integrase

DNA sequence : 
ATGGCACTGACTGACGCTAAAATTCGGGCGGCTAAACCCGATGTGAAATCCTATAAATTAACCGATGGTGCAGGTCTGCA
CTTATTGGTTCACTCTAATGGTTCTAAGTACTGGCGATTACGCTACCGCCATTTAGGTAAAGAGAAAACCTTAGCATTGG
GTTTATACCCTGATGTCTCTTTATCAGAGGCGCGTTTAAAACGTGATGAAGCAAGAAAATTGATTGCTGACGGTATTGAC
CCGTGCGAACAAAAACGTGTGGCTAAAGCAGCTTCTGATGCTAATCTCTCTTTTGAAACCATCGCAAGACAATGGCATGC
CAGCAATAAAAAATGGTCTGAATCACACAGTGAAAAGGTTTTAAAGAGTTTGGAGTCGCATGTATTCCCATACATTGGTC
TACGTGATATCACTACCCTCAAAACACCTGATCTACTGATCCCTATCCGTGCAGCAGAAAGTAAAGAGATTTATGAGATA
GCTGCGCGTTTACAGCAACGTATCGCTGCTGTCATGCGTTATGCGGTGCAATCAGGTATTATTGGCTATAACCCTGCTAT
TGATACCGCAGGGGCTGTAACGACTGTACAACGCCAACACCGTCCAGCTCTTAACCTTGACCGTCTACCGGAACTCATTA
CCCGTATCGATGCTTATAAAGGGCAACCCGTCACTCGCCTAGCCGTGATGTTAAATTTATTAGTATTTATTAGATCAAGC
GAACTTCGCTATGCGCGTTGGTCTGAAATTGACTTCGATAAAGCCTTATGGACGATTCCTGCTCAGCGAAAGCCTATACC
CGGCGTTAAATTCTCACACAGAGGCGCTAAAATGCGCACTCCGCATTTAGTTCCCCTTAGCCACCAAGCCATCACTATAC
TGAAAGAAATTTGGGCATGGACGGGTGAACATGAATTGATCCTAACGGGCGCTCATAATCCCTTTAAACCCATGAGTGAA
AATACAGTCAATAAAGCCTTACGTGTGATGGGCTATGATACCAAAACTGAAATTTGTGGACACGGTTTTAGAACGATGGC
GTGTAGTTCATTAGTTGAATCAGGTTTATGGTCGAAGGATGCAGTAGAAAGGCAAATGAGCCACCAAGAACGTAACTCAG
TGAGGGCTGCTTATATTCATAAGGCAGAACATATAGATCAACGCCGATTAATGGTGCAGTGGTGGGCGGATTATTTGGAT
GCTAATCGTGAACAAACGATTTCGCCATTCGACTTTGCAAAGTTGAATAATCCAATGAATCACTAA

Protein sequence : 
MALTDAKIRAAKPDVKSYKLTDGAGLHLLVHSNGSKYWRLRYRHLGKEKTLALGLYPDVSLSEARLKRDEARKLIADGID
PCEQKRVAKAASDANLSFETIARQWHASNKKWSESHSEKVLKSLESHVFPYIGLRDITTLKTPDLLIPIRAAESKEIYEI
AARLQQRIAAVMRYAVQSGIIGYNPAIDTAGAVTTVQRQHRPALNLDRLPELITRIDAYKGQPVTRLAVMLNLLVFIRSS
ELRYARWSEIDFDKALWTIPAQRKPIPGVKFSHRGAKMRTPHLVPLSHQAITILKEIWAWTGEHELILTGAHNPFKPMSE
NTVNKALRVMGYDTKTEICGHGFRTMACSSLVESGLWSKDAVERQMSHQERNSVRAAYIHKAEHIDQRRLMVQWWADYLD
ANREQTISPFDFAKLNNPMNH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 7e-171 80
int AAK16198.1 Int Not tested PAI-I AL862 Protein 4e-171 80
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 4e-171 80
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-170 80
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-170 80
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-170 80
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 9e-171 80
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-170 80
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 9e-171 80
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 9e-171 80
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-168 79
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-168 79
int AAK00456.1 Int Not tested SHI-1 Protein 2e-160 79
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-169 79
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-169 79
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-169 79
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-169 79
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-170 79
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-169 79
int CAC81896.1 integrase Not tested LEE II Protein 4e-159 78
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 9e-169 78
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-136 66
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-125 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-125 61
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-113 57
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-113 57
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 7e-82 56
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 6e-118 56
int CAA08754.1 integrase Not tested HPI Protein 3e-111 56
int CAB59974.1 integrase Not tested HPI Protein 3e-112 56
int YP_002346908.1 integrase Not tested HPI Protein 1e-110 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-110 55
int2 NP_993013.1 integrase Not tested HPI Protein 1e-110 55
int CAA21384.1 - Not tested HPI Protein 1e-110 55
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 1e-94 55
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-107 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-102 53
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 8e-75 43
int AAD44730.1 Int Not tested SHI-2 Protein 5e-79 42
int CAC39282.1 integrase Not tested LPA Protein 1e-79 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-79 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-71 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-78 41
int ACU09430.1 integrase Not tested LEE Protein 2e-78 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-78 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-78 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-77 41
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-77 41
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-77 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S70_06120 YP_006215787.1 Prophage integrase VFG1693 Protein 3e-171 80
S70_06120 YP_006215787.1 Prophage integrase VFG0626 Protein 4e-171 80
S70_06120 YP_006215787.1 Prophage integrase VFG1536 Protein 9e-137 66
S70_06120 YP_006215787.1 Prophage integrase VFG0783 Protein 1e-78 41
S70_06120 YP_006215787.1 Prophage integrase VFG0598 Protein 1e-77 41