Gene Information

Name : ST398NM01_0020 (ST398NM01_0020)
Accession : YP_006194225.1
Strain : Staphylococcus aureus 71193
Genome accession: NC_017673
Putative virulence/resistance : Virulence
Product : YycF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 25042 - 25749 bp
Length : 708 bp
Strand : +
Note : two-component response regulator

DNA sequence : 
ATGCAAATGGCTAGAAAAGTTGTTGTAGTTGATGATGAAAAACCGATTGCTGATATTTTAGAATTTAATTTAAAAAAAGA
AGGATACGATGTGTACTGTGCATACGATGGTAATGATGCAGTCGACTTAATTTATGAAGAAGAACCAGACATCGTATTGC
TAGATATCATGTTACCTGGTCGTGATGGTATGGAAGTATGTCGTGAAGTGCGCAAAAAATACGAAATGCCAATTATAATG
CTTACTGCTAAAGATTCAGAAATTGATAAAGTGCTTGGTTTAGAACTAGGTGCAGATGACTATGTAACGAAACCGTTTAG
TACGCGTGAATTAATCGCACGTGTGAAAGCGAACTTACGTCGTCATTACTCACAACCAGCACAAGACACTGGAAATGTAA
CGAATGAAATCACAATTAAAGATATTGTGATTTATCCAGACGCATATTCTATTAAAAAGCGTGGCGAAGATATTGAATTA
ACACATCGTGAATTTGAATTGTTCCATTATTTATCAAAACATATGGGACAAGTAATGACACGTGAACATTTATTACAAAC
AGTATGGGGCTATGATTACTTTGGCGATGTACGTACGGTCGATGTAACGATTCGTCGTTTACGTGAAAAGATTGAAGATG
ATCCGTCACATCCTGAATACATTGTGACGCGTAGAGGCGTTGGATATTTCCTCCAACAACATGAGTAG

Protein sequence : 
MQMARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGMEVCREVRKKYEMPIIM
LTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIEL
THREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ST398NM01_0020 YP_006194225.1 YycF NC_012469.1.7685629. Protein 1e-70 63
ST398NM01_0020 YP_006194225.1 YycF NC_003923.1003749.p0 Protein 2e-56 53
ST398NM01_0020 YP_006194225.1 YycF NC_002952.2859905.p0 Protein 2e-56 52
ST398NM01_0020 YP_006194225.1 YycF NC_009782.5559369.p0 Protein 3e-56 52
ST398NM01_0020 YP_006194225.1 YycF NC_002951.3237708.p0 Protein 3e-56 52
ST398NM01_0020 YP_006194225.1 YycF NC_002758.1121668.p0 Protein 3e-56 52
ST398NM01_0020 YP_006194225.1 YycF NC_007622.3794472.p0 Protein 2e-56 52
ST398NM01_0020 YP_006194225.1 YycF NC_009641.5332272.p0 Protein 3e-56 52
ST398NM01_0020 YP_006194225.1 YycF NC_013450.8614421.p0 Protein 3e-56 52
ST398NM01_0020 YP_006194225.1 YycF NC_007793.3914279.p0 Protein 3e-56 52
ST398NM01_0020 YP_006194225.1 YycF NC_002745.1124361.p0 Protein 3e-56 52
ST398NM01_0020 YP_006194225.1 YycF HE999704.1.gene2815. Protein 6e-52 50
ST398NM01_0020 YP_006194225.1 YycF NC_012469.1.7686381. Protein 4e-47 49
ST398NM01_0020 YP_006194225.1 YycF AE016830.1.gene1681. Protein 4e-48 46
ST398NM01_0020 YP_006194225.1 YycF AE000516.2.gene3505. Protein 8e-42 46
ST398NM01_0020 YP_006194225.1 YycF AM180355.1.gene1830. Protein 2e-45 45
ST398NM01_0020 YP_006194225.1 YycF NC_005054.2598277.p0 Protein 3e-42 44
ST398NM01_0020 YP_006194225.1 YycF NC_014475.1.orf0.gen Protein 3e-42 44
ST398NM01_0020 YP_006194225.1 YycF AF130997.1.orf0.gene Protein 1e-41 44
ST398NM01_0020 YP_006194225.1 YycF FJ349556.1.orf0.gene Protein 6e-41 44
ST398NM01_0020 YP_006194225.1 YycF AF155139.2.orf0.gene Protein 2e-38 43
ST398NM01_0020 YP_006194225.1 YycF DQ212986.1.gene4.p01 Protein 1e-41 42
ST398NM01_0020 YP_006194225.1 YycF NC_007793.3914065.p0 Protein 7e-36 41
ST398NM01_0020 YP_006194225.1 YycF NC_002758.1121390.p0 Protein 7e-36 41
ST398NM01_0020 YP_006194225.1 YycF NC_010079.5776364.p0 Protein 7e-36 41
ST398NM01_0020 YP_006194225.1 YycF NC_002952.2859858.p0 Protein 7e-36 41
ST398NM01_0020 YP_006194225.1 YycF NC_007622.3794948.p0 Protein 7e-36 41
ST398NM01_0020 YP_006194225.1 YycF NC_003923.1003417.p0 Protein 7e-36 41
ST398NM01_0020 YP_006194225.1 YycF NC_013450.8614146.p0 Protein 7e-36 41
ST398NM01_0020 YP_006194225.1 YycF NC_002951.3238224.p0 Protein 7e-36 41
ST398NM01_0020 YP_006194225.1 YycF AE015929.1.gene1106. Protein 9e-31 41
ST398NM01_0020 YP_006194225.1 YycF HE999704.1.gene1528. Protein 4e-35 41
ST398NM01_0020 YP_006194225.1 YycF AF162694.1.orf4.gene Protein 6e-37 41
ST398NM01_0020 YP_006194225.1 YycF CP001918.1.gene5135. Protein 8e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ST398NM01_0020 YP_006194225.1 YycF VFG1702 Protein 2e-37 41