Gene Information

Name : ST398NM01_2059 (ST398NM01_2059)
Accession : YP_006196090.1
Strain : Staphylococcus aureus 71193
Genome accession: NC_017673
Putative virulence/resistance : Virulence
Product : Sphingomyelin phosphodiesterase
Function : -
COG functional category : -
COG ID : -
EC number : 3.1.4.12
Position : 1975433 - 1976257 bp
Length : 825 bp
Strand : +
Note : -

DNA sequence : 
ATGTATCCAAACTGGGGTCAATATAAGCGTGCTGATTTAATTGGACAATCTTCTTACATCAAAAATAATGATGTCGTCAT
ATTTAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTTAAAAAAGAATATCCGTACCAAACACCTG
TCCTTGGTCGTTCTCAATCAGGTTGGGATAAAACAGAAGGTAGCTACTCATCAACTGTTGCTGAAGATGGCGGCGTAGCG
ATTGTAAGTAAATATCCTATTAAAGAAAAAATCCAACATGTTTTCAAAAGCGGTTGTGGATTTGACAATGACAGTAATAA
AGGCTTTGTTTATACAAAGATAGAGAAAAATGGTAAGAACGTTCACGTTATTGGTACACATACACAATCTGAAGATTCAC
GTTGTGGTGCTGGACATGATCGAAAAATTAGAGCTGAACAAATGAAAGAAATCAGTGACTTTGTTAAAAAGAAAAATATC
CCAAAAGATGAAACGGTATATATCGGTGGCGACTTGAATGTTAATAAAGGTACTCCAGAGTTCAAAGATATGCTTAAAAA
CTTGAATGTAAATGATGTTCTATATGCAGGACATAATAGCACATGGGACCCTCAATCAAATTCAATTGCGAAATATAATT
ATCCTAATGGTAAACCAGAACATTTAGACTATATATTTACAGATAAAGATCATAAACAACCAAAACAATTAGTCAATGAA
GTTGTGACTGAAAAACCTAAGCCATGGGATGTATATGCGTTCCCATATTACTACGTTTACAATGATTTTTCAGATCATTA
CCCAATCAAAGCCTATAGTAAATAG

Protein sequence : 
MYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVA
IVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNI
PKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNE
VVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlb NP_646757.1 truncated beta-hemplysin Not tested ¥ÕSa3 Protein 1e-124 100
hlb NP_375112.1 hypothetical protein Not tested ¥ÕSa3 Protein 5e-124 100
truncated-hlb NP_372527.1 hypothetical protein Not tested ¥ÕSa3 Protein 1e-123 99
unnamed CAA70683.2 sphingomyelinase-c Virulence LIPI-2 Protein 8e-68 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ST398NM01_2059 YP_006196090.1 Sphingomyelin phosphodiesterase VFG1798 Protein 2e-126 99
ST398NM01_2059 YP_006196090.1 Sphingomyelin phosphodiesterase VFG0674 Protein 4e-68 57