Gene Information

Name : xpsE (SMD_0580)
Accession : YP_006183348.1
Strain : Stenotrophomonas maltophilia D457
Genome accession: NC_017671
Putative virulence/resistance : Virulence
Product : General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 668320 - 670041 bp
Length : 1722 bp
Strand : +
Note : -

DNA sequence :
GTGAACGCGCTCGCTGCAACCGTTACCGACGACGCCGAAGGCCGCATCCTGGATGCGTTGCTGGCGCGCGGCCGGCTCAA
GGAAGGAGACCTGGCACGCGCGCGGCCATTGCATGCCGAGGCCGGCGGCAGTCTGCTGGGCCTGCTGGTGCGCCTGGGCC
TGGTGTCTGAACGCGACCAGGCACAGGCCAGCGCTGAGGTGCTGGGCCTGCCGCTGCTGGAGGGCAAGCAGGTGCCGGAG
GCCCCGCCGCAGGCGCTGGCCGAGGGACTTCCGCTGTCGCTGCGCTTCCTGAAGCAGTTCCATGTGTGCCCGCTGGAGTT
GGATGAACGCGGGGTGCGGCTGTGGCTGGCCGATGCCCACGACGCCTATCCACAGCAGGCCGTGCAGTTGGCCCTTGGGG
TTCCGGTGACACCGGTGCTGGGCATGCGCGCGGAGATCGATGACCTGGTCGAGCGCTGGTTCGGCCAGGGCCGCAGCGCG
ATGGGCGCGATCGTGGAAACCGCGGATGGCGAGGGCGGTGCGGTCGACGACATCGAGCACCTGCGCGACCTTGCGTCGGA
AGCACCGGTGATCCGCCTGGTCAACCTGGTGATCCAGCGTGCGGTGGAGCTGCGCGCTTCGGATATCCATGTCGAACCGT
TCGAGAGCCGGTTGAAGGTCCGCTACCGCGTCGATGGCGTGCTGGTGGAGGGCGAAAGCCCGCCGGCCAACCTCACCGCT
GCGGTGATCAGCCGCATCAAGATCATGGCCCGGCTCAACATCGCCGAGCGCCGCCTGCCGCAGGACGGCCGCATCATGCT
GCGCGTGCAGGGCAAGGAGCTGGACCTGCGCGTGAGCACGGTACCGACCGCGCATGGCGAAAGCGTGGTGATGCGCCTGC
TGGACCGCGAAACGGTGGTGTTCGATTTCCACCGGCTCGGCTTCACCGATGCCTTCCTGCCGCAGTTCCGCAAGGTGCTG
GAACAGCCGCATGGCATCCTGCTGGTCACCGGCCCGACCGGCTCGGGCAAGACCACCACGCTGTACACCGCGCTGAGCCA
GCTCAACACCGCCGACGTCAAGATCATCACGGTCGAAGACCCGGTGGAATACCAGATCGAAGGCATCAACCAGATCCAGG
CCAAGCCGCAGATCGGCCTCGACTTCGCCAATGCCCTGCGCAGCATCGTGCGCCAGGATCCGGACATCATCATGATCGGT
GAAATGCGCGACCTGGAAACCGCGCGCATCGCCATCCAGTCGGCGCTGACCGGCCACCTGGTGCTGTCCACCCTGCATAC
CAACAACGCAGCCGGTGGCATCACCCGCCTGCTCGACATGGGCGTGGAGGACTACCTGCTCACGTCCACCATCAACGGCA
TCCTGGCCCAGCGCCTGGTACGCCGGCTGGAGCCGACCCACGCCGAGCGCTACGAAGCCTCGCCGGAAGAGATCGAGCGG
TTCGAACTGCGCCGCCTGCAGCCGGAAGGGCCGATCCACCTGTACCGCCCGAAGCCGTCTGCGCTGGCACCGACCGGCTA
CCTGGGGCGTACCACCATCATGGAATTCCTGGTGATGAACGATGCGCTGCGCCGTGCGGTGATGCGCCGCGATGGCATGG
GCGAGATCGAGCGCATCGCCCGCGAGGCCGGCATGCGCACCATGTACGAGGATGGCCTGTCCAAGGCGTTGAGCGGGCAG
ACCACCATCGAGGAAGTGCTGCGCGTGACCGAGGAAAGCTGA

Protein sequence :
MNALAATVTDDAEGRILDALLARGRLKEGDLARARPLHAEAGGSLLGLLVRLGLVSERDQAQASAEVLGLPLLEGKQVPE
APPQALAEGLPLSLRFLKQFHVCPLELDERGVRLWLADAHDAYPQQAVQLALGVPVTPVLGMRAEIDDLVERWFGQGRSA
MGAIVETADGEGGAVDDIEHLRDLASEAPVIRLVNLVIQRAVELRASDIHVEPFESRLKVRYRVDGVLVEGESPPANLTA
AVISRIKIMARLNIAERRLPQDGRIMLRVQGKELDLRVSTVPTAHGESVVMRLLDRETVVFDFHRLGFTDAFLPQFRKVL
EQPHGILLVTGPTGSGKTTTLYTALSQLNTADVKIITVEDPVEYQIEGINQIQAKPQIGLDFANALRSIVRQDPDIIMIG
EMRDLETARIAIQSALTGHLVLSTLHTNNAAGGITRLLDMGVEDYLLTSTINGILAQRLVRRLEPTHAERYEASPEEIER
FELRRLQPEGPIHLYRPKPSALAPTGYLGRTTIMEFLVMNDALRRAVMRRDGMGEIERIAREAGMRTMYEDGLSKALSGQ
TTIEEVLRVTEES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 2e-88 49
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-88 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
xpsE YP_006183348.1 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) VFG0182 Protein 7e-90 51
xpsE YP_006183348.1 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) VFG2048 Protein 6e-89 49
xpsE YP_006183348.1 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) VFG0233 Protein 1e-66 43
xpsE YP_006183348.1 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) VFG0112 Protein 1e-78 41