Gene Information

Name : SMD_2578 (SMD_2578)
Accession : YP_006185289.1
Strain : Stenotrophomonas maltophilia D457
Genome accession: NC_017671
Putative virulence/resistance : Virulence
Product : amino acid permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2877173 - 2878525 bp
Length : 1353 bp
Strand : -
Note : -

DNA sequence :
ATGGCAGAAGCAAAGAAAATCGGGGTGGTCGGAGCCACCTTCCTCGTCGCCGGCAACATGATGGGCTCAGGCGTGTTCCT
GTTGCCGTCCAGCCTGGCCAAGATCGGTACCGCCTCGATCTGGGGCTGGCTGATCACCACCGCCGGTGCGCTGCTGCTGG
CCTTCGTGTTCGCCAAGCTGGGCAAGCTCGCACCCAAGGCGGGCGGTCCCTATGCCTACGCGCGCGACTGGTTCGGGCCG
TACATGGGCTTCCAGACCAACACCATCTACTGGTTCGCCAACTGGATCGGCAACGTCGCCATTCCGATCGCGGCGGTGGG
CTATTTCAGCTATTTCTTCCCGATCCTGTCCGAGCCGCTGGTGCGTTGCGTCGCGGTGCTGGTGCTGGTGTGGGCACTGA
GCTTTGCCAACGTGATCGGTCCGGCCTTCGTCAGCCGCGTGCAGACGGTCACCACCAGCTTTGCGTTGGTGCCGATCCTG
GGCATCGCCATTTTCGGCTGGTTCTTCTTCGATGCCGACATCTTCAAGGGCGCCTACAACGTGTCTGGCGAGTCGAACTT
CGGTGCGATCTCGAGCGCTGCGGCACTGACCCTGTGGGCCTTCATCGGCGTCGAGTCTGCATCGGTGACTGCCGGTGTGG
TCGAAAATCCGGAGAAGAACGTCGCCCGCGCGACGCTGGCCGGCGTGTTCCTGGCTGCCATCGCCTACATCGCCAGTTCG
TCGGTGATCATGGGCATGGTGCCGAACGCGGAACTGCAGGTGTCCGACGCACCGTTCGCGCTGGCGGCGGCCAAGGCGGT
CGGTGGCTGGGGCGGCGCGCTGGTCAGCCTGTGCGCCTTCATCGGTGCCGCCGGCTCGCTGGGTGGCTGGATCCTGCTGA
CCGCGCAGAGTGCCAAGGCAGCGTCGGATGACGGCCTGTTCCCGAGCATCTTCAGCAAGACCAACAAGGACGACGTGCCG
GTCAAGGGCGTGCTGATCGTGGCGGTGCTGATGACCCTGGCGGTGCTGGTGACCTCCACCTCGGAAACCGCGTCGGCCCA
GTTCGACGTGATCACGTCGGCGGCCGTGGTGCTGACCCTGCTGCCCTACATCTACTCGTGCGTGGCGTGCTACTTCGTGG
TCGAGCGTTCGCACACCCTGGTCCACACCGGTGCGTTCTGGACGCTGACCAGCCTGACCGTCGTGTACTGCCTGTGGGCG
ATCTACGGCTCGTCGGGGACCATCGTGCAGTACGCCTTCCTGTTCGTGCTGTTCATCACCGTGTTCTATCCCTTCTTCAG
CGAGGAGCGCCGCCAGCAGCGGCAGCGCGCCCGCGAGGCCTCGGCGATCAGCGCCGGCGCCCGGCATTCCTGA

Protein sequence :
MAEAKKIGVVGATFLVAGNMMGSGVFLLPSSLAKIGTASIWGWLITTAGALLLAFVFAKLGKLAPKAGGPYAYARDWFGP
YMGFQTNTIYWFANWIGNVAIPIAAVGYFSYFFPILSEPLVRCVAVLVLVWALSFANVIGPAFVSRVQTVTTSFALVPIL
GIAIFGWFFFDADIFKGAYNVSGESNFGAISSAAALTLWAFIGVESASVTAGVVENPEKNVARATLAGVFLAAIAYIASS
SVIMGMVPNAELQVSDAPFALAAAKAVGGWGGALVSLCAFIGAAGSLGGWILLTAQSAKAASDDGLFPSIFSKTNKDDVP
VKGVLIVAVLMTLAVLVTSTSETASAQFDVITSAAVVLTLLPYIYSCVACYFVVERSHTLVHTGAFWTLTSLTVVYCLWA
IYGSSGTIVQYAFLFVLFITVFYPFFSEERRQQRQRAREASAISAGARHS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66196.1 putative lysin/cadaverin transporter Virulence PAI III 536 Protein 1e-55 44
cadB NP_756989.1 lysine/cadaverine antiporter Not tested PAI II CFT073 Protein 8e-49 42
cadB AAL67382.1 cadaverine/lysine antiporter Not tested PAI II CFT073 Protein 6e-49 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMD_2578 YP_006185289.1 amino acid permease VFG1671 Protein 7e-56 44