Gene Information

Name : fliI (SMD_2061)
Accession : YP_006184779.1
Strain : Stenotrophomonas maltophilia D457
Genome accession: NC_017671
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase FliI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2290947 - 2292332 bp
Length : 1386 bp
Strand : -
Note : -

DNA sequence :
ATGAGCGCCGCACCGCAAACGACGCCGCCGCCGGCCGACTGGGCCGTGGCCCGCAACCTGCGCCTGGCCCGGCGCCTGGA
CGGCCTGCGCGTGGATACCGCGCATGGCCGTGGGCTGATCCGCGAGGGCGTGCTGCGCCGCGCGGTCGGGCTCACCCTGG
AAGCGGTCGGCTGCGAGGCGCCGCTGGGCGCCAGCTGCAAGGTGGAAGTGGTCGATGGTGGCTGGGTCGATGCCGAAGTG
GTCGGCTTTGCCGGTGAGCGCACCTACCTGATGCCCAGCGCCGAACTGCACGGCCTGCTGCCCAACGCCCGCGTGGTACC
GTCGGCGCGGCGTGGCGGCGTGGAAGTGGGTGAAGGCCTGCTCGGCCGCGTCATCGACAGCGACGGCGTGCCGCTGGATG
GCAAGGGCCCGATCCGCGCAGAAGGGCATGTCGGCATGGCCGGCGTGTCGATCAATCCGTTGGCGCGTGAACCGATCACC
CAGCCGCTGGACGTGGGCGTGCGCGCGATCAACGCGCTGTTGCCGATCGGCCGCGGCCAGCGTGTCGGCCTGTTCGCCGG
TTCCGGCGTCGGCAAGTCGACGCTGCTGGGCATGATGACCCGCTACACCGCTGCCGACGTGATCGTGGTCGGCCTGATTG
GTGAACGAGGCCGCGAAGTACGCGATTTCGTCGAGACCACGCTGGGCGAGGAAGGCCTGCGCCGCGCCGTGGTGGTGGCC
AGCCCCGCCGACCGGCCACCCTTGGCGCGCCTGCACGGTGCCTACCGTGCCACCGCCATCGCCGAGTGGTTCCGCGACCA
GGGCCTGAACGTGCTGCTGCTGATGGACTCGCTGACCCGCTTCGCCCAGGCGCAGCGCGAGATCGGCTTGTCGGTCGGTG
AACCACCGACCACCCGCGGTTACCCGCCCTCGGTGTTCGCCAAGCTGCCGGCGCTGGTCGAACGCGCTGGCAACGGCGCA
AAGGGCCGCGGCTCGATCACCGCGTTCTACACCGTACTGACCGAAGGCGATGATCCGCAGGATCCGATCGCCGACGCCGC
ACGCGCGATCCTCGACGGGCACATCCTGCTCTCGCGCCGGGTGGCCGACAGCGGCCTGTACCCGGCCATCGACGTCGAAT
CGTCGGTCAGCCGCGTGGTCACGGAAATCGCCGACGAGCCGTGGCGCCTGCGCATCCGCAAGTTGAAGCGACTGGTCTCG
GCGTACTCGGCCAACCGTGACCTGATCGCGATCGGTGCCTACCAGCGTGGTAACGACGCGGCCACCGACGAAGCCCTGGA
ACGCTGGCCGGAAATCATGGAGTTCCTCGGCCAGGACGTTGCCAAGGCCGCAGATCTCCCGCACAGCCAGGCGGCGCTGC
AGCGCCTGGTGGAACAAGAGAGTTAA

Protein sequence :
MSAAPQTTPPPADWAVARNLRLARRLDGLRVDTAHGRGLIREGVLRRAVGLTLEAVGCEAPLGASCKVEVVDGGWVDAEV
VGFAGERTYLMPSAELHGLLPNARVVPSARRGGVEVGEGLLGRVIDSDGVPLDGKGPIRAEGHVGMAGVSINPLAREPIT
QPLDVGVRAINALLPIGRGQRVGLFAGSGVGKSTLLGMMTRYTAADVIVVGLIGERGREVRDFVETTLGEEGLRRAVVVA
SPADRPPLARLHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAGNGA
KGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDVESSVSRVVTEIADEPWRLRIRKLKRLVS
AYSANRDLIAIGAYQRGNDAATDEALERWPEIMEFLGQDVAKAADLPHSQAALQRLVEQES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-84 50
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-84 50
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-82 50
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-82 50
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 8e-69 50
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-69 50
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-69 50
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-69 50
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 3e-69 50
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-83 49
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-83 49
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-84 49
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-84 49
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-84 49
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 5e-80 49
lscN AAO18044.1 LscN Virulence TTSS locus Protein 4e-76 48
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 4e-62 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 3e-69 45
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 3e-63 45
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 1e-63 45
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 3e-64 45
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 4e-63 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 7e-63 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 5e-63 44
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-59 44
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-59 44
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 5e-63 44
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-65 44
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 2e-58 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG1254 Protein 7e-112 61
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG2499 Protein 1e-107 59
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG2331 Protein 3e-101 57
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG0192 Protein 1e-78 51
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG0515 Protein 2e-69 50
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG0048 Protein 1e-78 49
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG0390 Protein 5e-79 48
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG2144 Protein 1e-76 46
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG2459 Protein 3e-64 41
fliI YP_006184779.1 flagellum-specific ATP synthase FliI VFG1008 Protein 1e-59 41