Gene Information

Name : SMD_1781 (SMD_1781)
Accession : YP_006184502.1
Strain : Stenotrophomonas maltophilia D457
Genome accession: NC_017671
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1964846 - 1966087 bp
Length : 1242 bp
Strand : -
Note : -

DNA sequence :
ATGCCGCGTACCGTCGCCCCTCTCACCGATACCGCCATCCGCAAGGCCAAGCCCGGCCCCAAGCCGACCAAGCTCCGGGA
CGGCGGCGGCTTGTACGTACAGCTCAACCCGGATGGTTCGCGTTGGTGGCGGTGGGACTACCGCCGACCCGTGACCGGGA
AGCGCAACACGCTCAGCTTGGGCACCTACCCCGAAGTCTCCTTGGCCGACGCACGCGGCCGCCAAGCTGAGGCTCGTCGG
CTCCTGGCATCAGGCATCGACCCAGGCGAACACCGGAAGGCCGCCAAGGTCGCCGGAGTGGAAAAGGCCGCCAACAGCTT
CGAGGTGGTGACCCGCGAATGGCTGGGGAAGCAGAAATGGGTGGAGTCCTACCGCTGCAAGGTCGTCGCCTGGATGGACA
ACGACGTATTCCCGTGGATTGGCGGGCGTCCGGTTGCGGAATTGGCGGCCCCCGATTTCCTGCGCGTGGCTCGCCGCATT
GAAGAACGCGGAGCCATCGAGTCAGCTCACCGGATCATGCAAAACTGCGGCCAGGTCATGCGGTACGCGGTCGCCACGGG
ACGGGCTGACCGGAATCCGGTGGCCGACCTGAGGGGTGCCCTGGCACCTCCTATGGAACGGCACCATGCCGCCATCACTG
ATCCACGCGAACTCGGCGGGCTGCTGCGGGCCATCGACGGCTATGCTGGCGATGCGAGCACCCGCGCCGCCCTCCGACTA
GCACCGCTGGTTTTCGTCCGTCCAGGCGAACTACGCCATGCCGAGTGGTCGGAGATCGACTTCGATGCAGGCGAGTGGAA
CATCCCCGCGCACAAGATGAAGATGCGCGAGCCGCACCTCGTTCCGCTGTCCTCGCAGGCTGTGGCGATCCTTCGCGACC
TGCAACCGCTGACGGGCCATCGCCAATACGTGTTCCCCGGTGGCCGTTCGCCCAAGCGACCGTTGAGCGATAACGCGCTC
ACCGCCGCGCTGCGCCGCATGGGTTTCGACAAGGAAACCATGACGGCCCACGGCTTCCGTGCCACTGCGCGCACGCTGTT
GGACGAAGTGCTGGGGTGGCGGCCGGACCTGATCGAGCATCAGTTGGCCCACGCCGTCCGCGATCCCAATGGGCGTGCCT
ACAATCGGACGAGCCACCTTCCCGAGCGCCGGAAGATGATGCAGGCGTGGGCGGACTATCTGGACGCCCTGCGCGCTGAC
ACGGGAAATGTAATCGTCCCGTTCAAGCCGAAGGCCGCTTAG

Protein sequence :
MPRTVAPLTDTAIRKAKPGPKPTKLRDGGGLYVQLNPDGSRWWRWDYRRPVTGKRNTLSLGTYPEVSLADARGRQAEARR
LLASGIDPGEHRKAAKVAGVEKAANSFEVVTREWLGKQKWVESYRCKVVAWMDNDVFPWIGGRPVAELAAPDFLRVARRI
EERGAIESAHRIMQNCGQVMRYAVATGRADRNPVADLRGALAPPMERHHAAITDPRELGGLLRAIDGYAGDASTRAALRL
APLVFVRPGELRHAEWSEIDFDAGEWNIPAHKMKMREPHLVPLSSQAVAILRDLQPLTGHRQYVFPGGRSPKRPLSDNAL
TAALRRMGFDKETMTAHGFRATARTLLDEVLGWRPDLIEHQLAHAVRDPNGRAYNRTSHLPERRKMMQAWADYLDALRAD
TGNVIVPFKPKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAD44730.1 Int Not tested SHI-2 Protein 2e-77 44
int ACU09430.1 integrase Not tested LEE Protein 6e-76 44
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 8e-76 44
ECs4534 NP_312561.1 integrase Not tested LEE Protein 8e-76 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 6e-76 44
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-71 44
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 7e-72 44
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 5e-72 44
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-72 44
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-72 44
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 9e-72 44
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-71 44
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-72 44
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-72 44
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-72 44
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-72 44
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-72 44
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-71 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-72 44
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-72 44
int CAC39282.1 integrase Not tested LPA Protein 1e-76 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-76 43
int AAK00456.1 Int Not tested SHI-1 Protein 3e-66 43
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-70 43
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-71 43
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-71 43
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-71 43
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-71 43
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-71 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 5e-76 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-76 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 5e-76 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-67 42
int CAC81896.1 integrase Not tested LEE II Protein 1e-64 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 9e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMD_1781 YP_006184502.1 integrase VFG0783 Protein 3e-76 44
SMD_1781 YP_006184502.1 integrase VFG0626 Protein 7e-73 44
SMD_1781 YP_006184502.1 integrase VFG1693 Protein 1e-72 44
SMD_1781 YP_006184502.1 integrase VFG0598 Protein 2e-76 43