Gene Information

Name : SMD_1550 (SMD_1550)
Accession : YP_006184282.1
Strain : Stenotrophomonas maltophilia D457
Genome accession: NC_017671
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1714992 - 1715663 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence :
GTGCTGACCAAGCTGCGCCAGGAGGGCTTCGAGCCCTTCATGGTGTGTCAGACGCGCGTGCGCAACGAAGACCGGCGCGA
GTACACGAAGCACCTCATCCGACTTCGCCATGCAAGCCAGATCAACGGCGACGAGGCGAACGAGATCATCCTGCTCAACA
GCCATGACGGCACGAGCAGCTATCAGATGCTCGCCGGCATGTTCCGGTTCGTCTGCCACAACGGCCTGGTTTGCGGTGAC
ACCACCGCAGACATCCGCGTTCCCCACAAGGGCGACGTGGCCAGCCAGGTGATCGAAGGTGCCTACGGAGTCCTCGAAGG
TTTCGAGCGCGTGCATAACGCGCGCGATGCGATGCGCACCATCACCCTCGATGAGGGCGAAGCGGAGGTCTTTGCGAACT
CTGCGCTCGCACTCAAGTACGACGATCCGGCCAAGTCCACGCCTGTCACCGAGAGCCAACTGCTGGCCCCTCGGCGATGG
GACGACCGCAAGAACGACCTGTGGGCCGTCTTCAACCGCGTCCAGGAGAACCTAGTCAAAGGGGGCCTGAACGGACGCAC
GGCCAACGGCCGCAATCAGCGCACCCGTCCGGTGCAAGGCATCGACCAGAACCTGCGCCTGAACCGGGCGTTGTGGCTGC
TGGCCGAAGGCATGCGCCAGCTCAAGGCGTGA

Protein sequence :
MLTKLRQEGFEPFMVCQTRVRNEDRREYTKHLIRLRHASQINGDEANEIILLNSHDGTSSYQMLAGMFRFVCHNGLVCGD
TTADIRVPHKGDVASQVIEGAYGVLEGFERVHNARDAMRTITLDEGEAEVFANSALALKYDDPAKSTPVTESQLLAPRRW
DDRKNDLWAVFNRVQENLVKGGLNGRTANGRNQRTRPVQGIDQNLRLNRALWLLAEGMRQLKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C80 AAN62174.1 conserved hypothetical protein; associated with oriT region on plasmids Not tested PAGI-2(C) Protein 5e-95 99
ORF SG86 AAN62307.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 6e-79 79
unnamed AAK00477.1 unknown Not tested SHI-1 Protein 3e-42 55
aec71 AAW51754.1 Aec71 Not tested AGI-3 Protein 8e-54 52
ECO103_3587 YP_003223444.1 hypothetical protein Not tested LEE Protein 7e-54 52
yafZ ADD91704.1 YafZ Not tested PAI-I AL862 Protein 8e-54 52
Z1215 NP_286750.1 hypothetical protein Not tested TAI Protein 4e-54 52
Z1655 NP_287158.1 hypothetical protein Not tested TAI Protein 4e-54 52
S3199 NP_838482.1 hypothetical protein Not tested SHI-1 Protein 1e-53 52
unnamed CAI43843.1 hypothetical protein Not tested LEE Protein 8e-54 52
SF2994 NP_708768.1 hypothetical protein Not tested SHI-1 Protein 1e-53 52
z1215 CAD33785.1 Z1215 protein Not tested PAI I 536 Protein 7e-54 51
yafZ CAE85199.1 YafZ protein Not tested PAI V 536 Protein 6e-56 51
unnamed CAD66201.1 hypothetical protein Not tested PAI III 536 Protein 2e-52 51
c5156 NP_757004.1 hypothetical protein Not tested PAI II CFT073 Protein 8e-53 51
yafZ YP_854321.1 hypothetical protein Not tested PAI I APEC-O1 Protein 7e-53 51
ORF_47 AAZ04456.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 5e-53 51
unnamed CAD42096.1 hypothetical protein Not tested PAI II 536 Protein 2e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMD_1550 YP_006184282.1 hypothetical protein VFG0658 Protein 4e-54 52
SMD_1550 YP_006184282.1 hypothetical protein VFG1676 Protein 1e-52 51
SMD_1550 YP_006184282.1 hypothetical protein VFG1526 Protein 4e-54 51
SMD_1550 YP_006184282.1 hypothetical protein VFG1615 Protein 1e-52 50