Gene Information

Name : SMD_1541 (SMD_1541)
Accession : YP_006184273.1
Strain : Stenotrophomonas maltophilia D457
Genome accession: NC_017671
Putative virulence/resistance : Unknown
Product : superfamily II DNA/RNA helicases, SNF2 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1707906 - 1710182 bp
Length : 2277 bp
Strand : -
Note : -

DNA sequence :
ATGTCCCTCGATCTCGAAACCACTGCCGCTGAATCCGCGCCCGTACAGGGCGAACTGCTCGACGCGGAATCTTCCCCTCT
GACCCTGAGCCTTCAGGATTTTGTCGGCGAGTTCGGCGACGAACTACTCGACGCCCTCAACAGCGCTAATCCGCCGGTCT
ATACCGGCCAACCGCAGGCGCACCGGCAACTGGTGGTCGCCAGCCTCAAGCGCAAGCTGTTCCCAGCCCAGGCCGAAGTC
GTCCACGCCGCCGCCGAGCTGCTGATCGACCGTGGCGAACGTGCTGCGATCGTCAATGGCGAGATGGGCTGCGGCAAGAC
GACCGTCGGCATTGCGGCCGCCGTGCTCAACGCCGAAGGCTATCGCCGCACTCTGGTGCTGTCGCCGCCCCACCTGGTTT
ACAAGTGGCGGCGCGAGATCCAGGAGACGGTGGCCGGTGCCAAGGTGTGGGTACTCAACGGGCCGGATACGCTCGTCAAG
CTCATCAAGCTGCGCGAGCAGTTGGGCGTGCAGCCCACGGGCCAGGAGTTCTTCGTCCTGGGGCGCGTCAGGATGCGGAT
GGGCTTTCACTGGAAGCCTGTCTTCACCACGCGGCGCACCCGCCACGGCGACGTGGCGGCCTGCCCGGACTGCGGCACGG
TCATCACCGACCTCGACGGCGAGCCGGTCAACCCGATCGCGCTCCAAGCCGAGGAGTGCCGCAGGAAGTGCGGCCACTGC
GCCGCGCCCCTGTGGACACTGATCCGCCCGCGCAGTCTGTCCGGCAGCGACCAGTCCTCGGCCGTGCTCAAAGCCTTAAA
GCGCATACCGACCATCGGAGAGGTCACCGCGCAGAAGCTGATGCAAAAGTTCGGTGACGGGTTCCTGGCGTCGATGCTCG
GCGACAACATCCATGAGTTCATCAACCTCATGGATGGCAACGGCGAGCTGGTGTTTTCCGACCGTCAGGCCACGCGCATG
GAACGTGCGATGGCCAACATGGAGTTCGGCTTTGGCGAGGGCGGCTATCAGCCGTCCGAGTTCATCAAACGCTACCTGCC
GCAAGGCACGTTCGACCTGCTCATCGCCGATGAGGCACATGAGTACAAGAACGGGGGCAGTGCCCAGGGCCAGGCCATGG
GCGTGCTGGCGGCGAAGGCTCGCAAGACCTTGCTGCTGACCGGCACGTTGATGGGCGGCTACGGGGACGACCTGTTCCAC
CTGCTGTTCCGAGCCCTTCCGGGGCGGATGATCGAAGACGGCTACCGCCCGACCACGAGCGGCAGCATGACCTCGGCTGC
GATGGCGTTCATGCGCGATCACGGGGTGTTGAAGGACATCTACTCCGAGAGCACCGGCACGGCGCACAAGACGGCCAAGG
GCACCAAGGTATCGGTGCGCATGGTCAAGGCCCCGGGGTTTGGCCCCAAGGGCGTGCTGCGCTGCATCCTGCCGTTCACG
ATCTTTCTCAAGCTCAAGGACATCGGTGGCAACGTCCTGCCGCCGTATGACGAGGAGTTCCGTGAAGTCGCGATGGACAC
GGCGCAAGCCGCGGCCTACCGCGATCTGGCGGGTCGGCTGACCGCGGAGCTGAAACAGGCTCTGGCGCGACGCGATACGA
CCTTGCTGGGTGTGGTCCTCAACGTGCTGCTGGCCTGGCCGGATTGCTGCTTCCGGTCGGAGACCGTGGTGCATCCGCGC
ACGCGCAACACCTTGGCGTTTGTCCCGGCTCAGTTCAACGAGTTCGAGATCAGCCCCAAGGAGCGTGAGCTGATCGACAT
CTGCAAAGAGGAGAAGGCGCAGGGCCGCAAGGTCCTGGCCTACACGGTCTATACCGGCACGCGCGACACCACGTCGCGCC
TGAAGGTGTTGCTGGAGCAGGAAGGCTTCAAGGTGGCGGTGCTGCGCGCGAGCGTGGATGCCAGCCGCCGCGAAGACTGG
ATCGCCGAGCAACTGGACCGTGGCATCGACGTGCTCATCACCAACCCCGAGTTGGTCAAGACGGGGCTGGACCTGTTGGA
GTTCCCGACGATCGTGTTCATGCAGTCGGGCTACAACGTGTACTCGCTCCAGCAGGCGGCACGCCGCTCCTGGCGCATCG
GGCAGAAGCAGCCCGTGCGTGTGATCTACCTCGGCTACGCCGGTTCCTCGCAGATGACCTGCCTGGAGCTGATGGCCAAG
AAGATCATGGTCTCGCAGTCCACCTCGGGCGACGTGCCCGAATCCGGGCTCGATGTCCTGAACCAGGACGGTGATTCCGT
CGAGGTCGCACTGGCCCGGCAGCTTGTCGCCGCATGA

Protein sequence :
MSLDLETTAAESAPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQLVVASLKRKLFPAQAEV
VHAAAELLIDRGERAAIVNGEMGCGKTTVGIAAAVLNAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVK
LIKLREQLGVQPTGQEFFVLGRVRMRMGFHWKPVFTTRRTRHGDVAACPDCGTVITDLDGEPVNPIALQAEECRRKCGHC
AAPLWTLIRPRSLSGSDQSSAVLKALKRIPTIGEVTAQKLMQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRM
ERAMANMEFGFGEGGYQPSEFIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKARKTLLLTGTLMGGYGDDLFH
LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIYSESTGTAHKTAKGTKVSVRMVKAPGFGPKGVLRCILPFT
IFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRDLAGRLTAELKQALARRDTTLLGVVLNVLLAWPDCCFRSETVVHPR
TRNTLAFVPAQFNEFEISPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRREDW
IAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKQPVRVIYLGYAGSSQMTCLELMAK
KIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C71 AAN62165.1 conserved hypothetical plasmid protein Not tested PAGI-2(C) Protein 0.0 99
ORF SG81 AAN62302.1 conserved hypothetical plasmid protein Not tested PAGI-3(SG) Protein 0.0 88
RL063 AAP84188.1 plasmid related protein Not tested PAPI-1 Protein 0.0 72
unnamed ABR13404.1 putative helicase Not tested PAGI-5 Protein 0.0 72
pph67 CAI36108.1 superfamily II DNA/RNA helicase Not tested PPHGI-1 Protein 0.0 70
yea AAW83099.1 Yea Not tested GGI Protein 8e-175 50