Gene Information

Name : SMD_1482 (SMD_1482)
Accession : YP_006184216.1
Strain : Stenotrophomonas maltophilia D457
Genome accession: NC_017671
Putative virulence/resistance : Unknown
Product : ISStmaD5 transposase B
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1653126 - 1654037 bp
Length : 912 bp
Strand : +
Note : -

DNA sequence :
GTGAAGACCTTCATCGACCAGCATCGCAACGCCTTCGGGGTCGAGCCGCTCTGCAAGGTGTTGCAGGTTGCCCCGTCGGC
CTACCGGCGCCATGCCGCGCTGCTGCGCGAGCCCCACAGGCGCTGTGCCCGCGCCAAACGCGACGAGCTGCTGATGCCGC
AGATTGAGCGCGTCTGGCAGGCCAACATGCAGGTCTACGGTGCCGACAAGGTGTGGCGGCAACTGGCGCGCGAAGGCACT
GCCGTGGCTCGCTGCACGGTCGAGCGGCTGATGCGCAGCATGGGACTGCGCGGCGTGATGCGCGGCAAGGTCGTGCGCAC
CACCATCAGCGATGCCAAGGCCGCGTGCCCGCTGGACCGGGTCAACCGGCAGTTCCGTGCGGAGCGGCCGAACCAGCTGT
GGGTCAGCGACTTCACCTACGTCCCCACCTGGCAGGGCTGGCTGTACGTGGCCTTCGTCATCGACGTGTTCGCCCGGCGC
ATCGTGGGCTGGCGGGTGAGCAGTTCGATGCGCACGGACCTCGTGCTCGACGCGCTGGAGCAAGCCCTGTACGCCCGCCA
GCCCGAGCGCGATGGCAGCTTGGTCTGCCACTCCGACAGGGGCTCGCAATACGTCAGCATCCGCTACACCGAGCGGCTGG
CCGAGGCCGGCATCGAGCCGTCCGTGGGTAGCAAGGGCGACAGCTACGACAACGCACTGGCCGAGACCATCAATGGCCTG
TACAAGGCCGAGCTGATTCACCGCCGGGCGCCCTGGAAAACCAGGGAGGCCGTCGAGTTCGCCACGCTGGAGTGGGTGTC
CTGGTTCAACCATCAACGCCTGCTCGAACCCATCGGCTACATCCCGCCGGCCGAGGCCGAGGCAAACTACTACCGGCAAC
TCGCCAGTCAGACCACCACGGTGGCGGGCTGA

Protein sequence :
MKTFIDQHRNAFGVEPLCKVLQVAPSAYRRHAALLREPHRRCARAKRDELLMPQIERVWQANMQVYGADKVWRQLAREGT
AVARCTVERLMRSMGLRGVMRGKVVRTTISDAKAACPLDRVNRQFRAERPNQLWVSDFTYVPTWQGWLYVAFVIDVFARR
IVGWRVSSSMRTDLVLDALEQALYARQPERDGSLVCHSDRGSQYVSIRYTERLAEAGIEPSVGSKGDSYDNALAETINGL
YKAELIHRRAPWKTREAVEFATLEWVSWFNHQRLLEPIGYIPPAEAEANYYRQLASQTTTVAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-61 68
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-61 67
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-69 67
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 3e-76 63
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 5e-80 62
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-79 62
Z1198 NP_286733.1 transposase Not tested TAI Protein 9e-78 62
Z1638 NP_287141.1 transposase Not tested TAI Protein 9e-78 62
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-78 62
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-78 62
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 6e-77 61
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-76 61
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-76 61
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-76 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-79 61
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-79 61
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 5e-80 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-79 61
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-79 61
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-56 61
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 6e-76 59
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-54 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 1e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMD_1482 YP_006184216.1 ISStmaD5 transposase B VFG1602 Protein 3e-76 59