Gene Information

Name : SMD_1481 (SMD_1481)
Accession : YP_006184215.1
Strain : Stenotrophomonas maltophilia D457
Genome accession: NC_017671
Putative virulence/resistance : Unknown
Product : ISStmaD5 transposase A
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1652806 - 1653129 bp
Length : 324 bp
Strand : +
Note : -

DNA sequence :
ATGAGCAAGTCGAACAAGTTCTCGCCCGAGGTGCGCGAGCGCGCGGTGAGGATGGTGCAGGAGCAGCGTGGGGAGTACCC
GTCGTTGTGGGCGGCCATCGAGTCCATCTCCCCCAAGATTGGCTGCGTGCCGCAGACCTTGAACGAATGGGTCAAGCGCG
CCGAGGTCGACGCCGGCATGCGTGAAGGCGTGACGAGCAGCGAAGCACAGCGGATGAAGGAGCTCGAGCGTGAGGTCAAG
GAACTGCGCCGGGCCAACGAGATACTGAAGCTGGCCAGCGCGTTTTTCGCCCAGGCGGAGCTCGACCGCCGCCTGAAGTC
GTGA

Protein sequence :
MSKSNKFSPEVRERAVRMVQEQRGEYPSLWAAIESISPKIGCVPQTLNEWVKRAEVDAGMREGVTSSEAQRMKELEREVK
ELRRANEILKLASAFFAQAELDRRLKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1199 NP_286734.1 hypothetical protein Not tested TAI Protein 6e-19 63
Z1222 NP_286757.1 hypothetical protein Not tested TAI Protein 6e-19 63
Z1639 NP_287142.1 hypothetical protein Not tested TAI Protein 6e-19 63
Z1661 NP_287163.1 hypothetical protein Not tested TAI Protein 6e-19 63
ECO111_3720 YP_003236060.1 putative IS629 transposase OrfA Not tested LEE Protein 6e-17 62
ECO111_3775 YP_003236110.1 putative IS629 transposase OrfA Not tested LEE Protein 6e-17 62
Z4335 NP_289560.1 hypothetical protein Not tested OI-122 Protein 6e-17 62
unnamed AAF09023.1 unknown Not tested SHI-O Protein 3e-16 61
tnpE AAD44738.1 TnpE Not tested SHI-2 Protein 3e-16 61
IS629 CAC37925.1 hypothetical protein Not tested LEE Protein 1e-18 61
IS629 CAI43820.1 hypothetical protein Not tested LEE Protein 1e-18 61
IS629 CAI43841.1 hypothetical protein Not tested LEE Protein 1e-18 61
IS629 CAI43908.1 hypothetical protein 1 Not tested LEE Protein 1e-18 61
unnamed CAD42084.1 hypothetical protein Not tested PAI II 536 Protein 3e-15 61
ECO103_3584 YP_003223442.1 IS629 transposase OrfA Not tested LEE Protein 2e-18 61
unnamed AAL67399.1 TnpE-like protein Not tested PAI II CFT073 Protein 8e-16 60
c5214 NP_757062.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-15 60
unnamed ADD91740.1 hypothetical protein Not tested PAI-I AL862 Protein 8e-16 60
S3184 NP_838467.1 IS629 orfA Not tested SHI-1 Protein 1e-15 60
SF2979 NP_708753.1 IS629 ORF1 Not tested SHI-1 Protein 1e-15 60
SF3706 NP_709445.1 IS629 ORF1 Not tested SHI-2 Protein 4e-16 60
APECO1_3498 YP_854313.1 transposase; OrfA protein of insertion sequence IS629 Not tested PAI I APEC-O1 Protein 2e-14 60
ORF_36 AAZ04445.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-14 60
S4062 NP_839231.1 IS629 orfA Not tested SHI-2 Protein 9e-15 60
c5168 NP_757016.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-15 60
c3596 NP_755471.1 hypothetical protein Not tested PAI I CFT073 Protein 9e-14 58
c5177 NP_757025.1 hypothetical protein Not tested PAI II CFT073 Protein 9e-14 58
r13 AAC61722.1 R13 Not tested PAI I CFT073 Protein 6e-14 58
ECUMN_3344 YP_002414020.1 transposase ORF A, IS629 Not tested Not named Protein 9e-14 58
unnamed AAL67404.1 R13-like protein Not tested PAI II CFT073 Protein 6e-14 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMD_1481 YP_006184215.1 ISStmaD5 transposase A VFG1603 Protein 1e-15 61
SMD_1481 YP_006184215.1 ISStmaD5 transposase A VFG0643 Protein 3e-16 60
SMD_1481 YP_006184215.1 ISStmaD5 transposase A VFG0606 Protein 1e-16 60
SMD_1481 YP_006184215.1 ISStmaD5 transposase A VFG1717 Protein 3e-14 58