Gene Information

Name : P12B_c3180 (P12B_c3180)
Accession : YP_006170180.1
Strain : Escherichia coli P12b
Genome accession: NC_017663
Putative virulence/resistance : Unknown
Product : Putative transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3480165 - 3480854 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence :
ATGCCGAGTTATGGTTATCGACGCGTGTGGGGCATCCTGCGCAAGCAACGTCGCACAGAGGGACAGCCACCTGTGAACGC
CAAACGGCTTTACAGGATAATGAGCGAGCATAACCTGTTGTTGTTGCATGACAAACCAGAGCGACCGAAGCGTGAACATA
AGGGCAAGATAGCGGTGGCAGAAAGCGATATGCGCTGGTGTTCAGATGGCTTCGAGTTCGGCTGCGACAACGGCGAAAAA
CTGCGGGTAACGTTCGCGCTGGACTGCTGCGACCGTGAGGCCATAGACTGGGCAGCAAGCACGGGAGGCTATGACAGTTC
GACCGTGCAGGATGTGATGCTGAGGTCGGTGGAAAAGCGCTTCGGCGACAGGCTACCGGAAACACCAGTGCAGTGGCTGA
CGGATAACGGTTCAGCGTATACCGCGTATGAAACGCGGAGGTTCGCGAGAGAGCTGAATCTGGAGCCCTGCACAACAGCG
GTGAGCAGCCCGCAGAGTAATGGCATGGCCGAACGGTTCGTGAAAACGATGAAAGAAGACTATATCGCGTTCATGCCAAA
ACCGGATGTGAGAACAGCACTGCGAAACCTTGCAGTAGCGTTCACGCATTACAATGAAAACCACCCGCACAGCGCGCTGG
GATATCACTCCCCGAGGGAATACCGGCGGCAGCGGACATCGTTAACTTAA

Protein sequence :
MPSYGYRRVWGILRKQRRTEGQPPVNAKRLYRIMSEHNLLLLHDKPERPKREHKGKIAVAESDMRWCSDGFEFGCDNGEK
LRVTFALDCCDREAIDWAASTGGYDSSTVQDVMLRSVEKRFGDRLPETPVQWLTDNGSAYTAYETRRFARELNLEPCTTA
VSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRRQRTSLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 4e-93 84
c5197 NP_757045.1 transposase insD Not tested PAI II CFT073 Protein 5e-66 81
insD YP_854263.1 IS2 transposase Not tested PAI I APEC-O1 Protein 4e-66 81
insD AAZ04432.1 IS2 transposase Not tested PAI I APEC-O1 Protein 3e-66 81
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 1e-75 71
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 8e-73 68
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 6e-73 68
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 4e-72 67
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 3e-72 67
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 2e-72 67
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 3e-72 67
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 3e-72 67
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 3e-72 67
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 1e-72 67
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 2e-71 67
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 1e-70 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
P12B_c3180 YP_006170180.1 Putative transposase VFG1732 Protein 2e-73 68
P12B_c3180 YP_006170180.1 Putative transposase VFG0649 Protein 1e-72 67
P12B_c3180 YP_006170180.1 Putative transposase VFG0608 Protein 1e-72 67
P12B_c3180 YP_006170180.1 Putative transposase VFG0621 Protein 1e-72 67