Gene Information

Name : yghJ (P12B_c3069)
Accession : YP_006170072.1
Strain : Escherichia coli P12b
Genome accession: NC_017663
Putative virulence/resistance : Virulence
Product : Putative lipoprotein acfD-like protein precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3355383 - 3359945 bp
Length : 4563 bp
Strand : -
Note : -

DNA sequence :
ATGAATAAGAAATTTAAATATAAGAAATCGCTTTTAGCGGCTATTTTGAGCGCAACCCTGTTAGCCGGTTGTGATGGCGG
TGGTTCCGGATCTTCCTCCGATACGCCGCCTGTAGATTCTGGAACAGGGTCTTTGCCGGAAGTGAAACCTGATCCAACAC
CAAACCCGGAGCCGACGCCTGAGCCAACGCCGGACCCAGAGCCTACGCCAGAACCGATACCTGATCCTGAACCAACACCA
GAACCGGAGCCAGAACCTGTTCCTACGAAAACGGGTTATCTGACCCTGGGCGGAAGCCAGCGGGTAACTGGTGCTACCTG
TAATGGTGAATCCAGCGATGGCTTTACATTTAAACCTGGCGAGGACGTTACTTGCGTGGCGGGTAACACGACAATTGCCA
CCTTCAACACTCAGTCAGAAGCTGCGCGTAGCTTGCGTGCGGTTGAAAAAGTGTCGTTTAGCCTTGAGGACGCGCAAGAA
CTGGCGGGCTCCGATGACAAGAAAAGCAATGCGGTTTCGCTGGTAACGTCCAGTAACAGCTGTCCGGCGAATACAGAACA
GGTTTGTCTGACGTTCTCCTCGGTGATCGAGAGTAAACGCTTCGACTCGCTGTATAAGCAAATCGATCTGGCACCGGAAG
AGTTCAAAAAGCTGGTCAATGAAGAGGTGGAAAACAATGCTGCGACCGATAAAGCGCCATCCACTCATACTTCACCGGTC
GTGCCCGTCACCACGCCGGGAACAAAACCGGATCTGAACGCTTCCTTCGTGTCGGCTAACGCGGAACAGTTTTATCAGTA
TCAACCCACTGAAATCATTCTCTCTGAAGGTCGACTGGTCGATAGCCAGGGATATGGTGTTGCTGGCGTCAACTACTACA
CCAATTCAGGCCGTGGCGTGACAGGGGAAAATGGTGAATTTTCCTTTAGCTGGGGCGAAACCATCTCCTTTGGTATCGAT
ACCTTTGAACTGGGTTCAGTGCGCGGCAATAAGTCGACCATTGCGCTGACTGAACTGGGTGATGAAGTTCGCGGGGCGAA
TATTGATCAGCTTATTCATCGCTATTCGACGACCGGGCAAAATAATACCCGTGTTGTTCCGGACGATGTACGCAAGGTCT
TTGCCGAATATCCCAACGTGATCAACGAGATTATCAATCTCTCGTTATCCAACGGTGCGACGCTGGGGGAAGGTGAGCAA
ATCGTTAATCTGCCTAACGAATTTATTGAGCAGTTTAATACGGGTCAGGCCAAAGAGATCGATACCGCGATTTGTGCGAA
AACCGATGGTTGTAACGAGGCTCGCTGGTTCTCGCTGACGACGCGCAATGTTAATGACGGCCAGATTCAGGGCGTTATCA
ACAAGCTGTGGGGCGTGGATACGAACTACAAATCTGTCAGCAAGTTCCATGTATTCCATGACTCCACCAACTTCTATGGC
AGCACGGGTAATGCGCGCGGTCAGGCGGTGGTGAATATCTCCAACGCGGCCTTCCCGATTCTGATGGCGCGTAATGATAA
AAACTACTGGCTGGCCTTCGGCGAAAAACGCGCCTGGGATAAAAACGAGCTGGCGTACATTACGGAAGCGCCTTCTCTTG
TTGAGCCGGAAAACGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTTATTTCGCTGGGGCAAGTCGGTGAGGGCAAA
CTGATGGTTATCGGTAACCCACACTACAACAGCATTTTGCGTTGCCCGAACGGTTACAGCTGGAACGGGGGCGTTAATAA
AGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACATGAAGAACTTCATGGAGAACGTGCTGCGCTATCTGTCCGACG
ATAAATGGAAGCCGGACGCGAAAGCCAGCATGACCGTAGGCACCAACCTGGATACTGTCTATTTTAAACGTCATGGTCAG
GTTACAGGAAACAGCGCTGCGTTCGACTTCCATCCGGATTTTGCGGGCATCTCTGTTGAGCATTTAAGTAGCTATGGCGA
TCTCGATCCGCAGGAAATGCCGCTGCTGATCCTTAACGGCTTTGAATATGTGACTCAGGTGGGTAACGATCCTTATGCAA
TCCCGCTGCGTGCAGATACCAGCAAACCGAAGCTGACTCAGCAGGATGTGACCGATCTGATCGCCTATCTGAACAAAGGT
GGATCGGTGCTGATCATGGAAAACGTGATGAGCAATCTTAAGGAAGAGAGCGCGTCTGGTTTTGTGCGTCTGTTGGATGC
CGCAGGTCTGTCGATGGCACTGAACAAGTCGGTAGTAAATAACGATCCGCAAGGGTATCCGAACCGCGTTCGTCAGCAGC
GCGCAACGGGCATTTGGGTCTATGAACGTTATCCTGCCGTAGATGGTGCGCTGCCGTACACCATCGATAGTAAGACAGGG
GAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAGCTGGCTGGAAGATGT
AGATGGCAAACAGGAAACGCGTTATGCCTTTATTGATGAGGCCGATCATAAAACAGAGGATTCTCTGAAGGCTGCGAAGG
AGAAAATTTTCGCCGCGTTCCCGGGGCTGAAAGAGTGTACTAATCCGGCATATCACTATGAGGTCAACTGCCTGGAATAT
CGTCCTGGCACGGGGGTTCCGGTTACTGGTGGCATGTATGTTCCACAGTATACGCAACTAAGCCTTAACGCCGACACTGC
AAAAGCGATGGTGCAGGCTGCGGATTTAGGCACCAACATTCAGCGTCTGTATCAGCATGAGCTCTACTTCCGGACCAATG
GTCGCAAAGGTGAGCGTCTGAGCAGCGTCGATCTGGAACGTCTGTACCAGAACATGTCGGTCTGGCTGTGGAACGATACG
AGCTATCGTTATGAAGAAGGCAAAAATGACGAGCTGGGCTTTAAAACGTTCACCGAGTTCCTGAACTGCTACGCCAATGA
TGCCTATGCAGGTGGCACCAAGTGTTCTGCAGATCTGAAAAAATCGCTGGTCGATAACAACATGATCTACGGTGACGGTA
GCAGCAAAGCGGGCATGATGAACCCGAGCTACCCGCTCAACTATATGGAAAAACCGCTGACACGCCTGATGCTGGGCCGT
TCCTGGTGGGATCTGAACATCAAAGTTGATGTCGAGAAGTATCCGGGAGCAGTATCGGAAGAGGGACAGAACGTTACTGA
AACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGA
AAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTGGCGCTGGCTGACGACCTGACCGGACGTGAG
AAGCATGAAGTTGCGCTGAACCGTCCGCCAAGAGTGACTAAAACGTACTCTCTGGACGCTAGCGGTACGGTGAAGTTCAA
GGTGCCTTACGGTGGCCTGATTTATATCAAGGGCAATAGCTCTACCAATGAATCTGCCAGCTTCACCTTTACTGGCGTGG
TAAAAGCACCGTTCTATAAAGACGGCGCATGGAAAAACGATCTGAACTCACCGGCTCCGCTGGGTGAGCTGGAATCAGAC
GCTTTCGTCTATACCACACCGAAGAAGAACCTGAATGCCAGCAATTACACTGGCGGACTGGAGCAATTCGCTAACGATCT
GGATACCTTTGCCAGCTCGATGAATGACTTCTACGGCCGTGATAGCGAAGACGGTAAGCACCGGATGTTTACCTATAAAA
ACTTGCCGGGCCACAAACATCGTTTCACCAACGATGTGCAGATCTCCATCGGTGATGCGCATTCGGGTTATCCGGTAATG
AACAGCAGCTTCTCGCCGAACAGCACCACGCTGCCGACGACGCCGCTGAACGACTGGCTGATCTGGCATGAAGTCGGTCA
TAACGCCGCAGAAACGCCGTTGACTGTACCGGGTGCAACTGAAGTCGCTAACAACGTGCTGGCGCTGTACATGCAGGATC
GTTATCTCGGCAAGATGAACCGTGTCGCTGACGATATTACCGTCGCACCGGAATATCTGGAGGAGAGCAACAACCAGGCA
TGGGCACGCGGCGGTGCGGGTGACCGTCTGCTGATGTACGCACAGCTGAAGGAATGGGCAGAGAAAAACTTTGATATCAA
GAAATGGTATCCAGATGGCACTCCTCTGCCAGAGTTTTACAGCGAGCGTGAAGGGATGAAAGGCTGGAACCTGTTCCAGT
TGATGCATCGTAAAGCACGCGGCGATGAGGTCAGCAATGACAAGTTTGGCGGCAAGAATTACTGTGCTGAATCCAACGGT
AACGCAGCGGACACGCTGATGCTGTGTGCCTCCTGGGTCGCCCAGACGGATCTTTCGGAGTTCTTTAAGAAATGGAATCC
GGGCGCGAATGCTTACCAGCTGCCGGGGGCGAGCGAGATGAGCTTCGAGGGCGGTGTGAGCCAGTCGGCTTACAACACGC
TCGCGTCACTCGATCTGCCGAAACCGGAACAGGGACCGGAAACCATTAATCAGGTTACCGAGCATAAGATGTCTGCCGAG
TAA

Protein sequence :
MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPPVDSGTGSLPEVKPDPTPNPEPTPEPTPDPEPTPEPIPDPEPTP
EPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVSFSLEDAQE
LAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPV
VPVTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDSQGYGVAGVNYYTNSGRGVTGENGEFSFSWGETISFGID
TFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINEIINLSLSNGATLGEGEQ
IVNLPNEFIEQFNTGQAKEIDTAICAKTDGCNEARWFSLTTRNVNDGQIQGVINKLWGVDTNYKSVSKFHVFHDSTNFYG
STGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFISLGQVGEGK
LMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYLSDDKWKPDAKASMTVGTNLDTVYFKRHGQ
VTGNSAAFDFHPDFAGISVEHLSSYGDLDPQEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKG
GSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPNRVRQQRATGIWVYERYPAVDGALPYTIDSKTG
EVKWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDEADHKTEDSLKAAKEKIFAAFPGLKECTNPAYHYEVNCLEY
RPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNDT
SYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSADLKKSLVDNNMIYGDGSSKAGMMNPSYPLNYMEKPLTRLMLGR
SWWDLNIKVDVEKYPGAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANVPVTVTVALADDLTGRE
KHEVALNRPPRVTKTYSLDASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVVKAPFYKDGAWKNDLNSPAPLGELESD
AFVYTTPKKNLNASNYTGGLEQFANDLDTFASSMNDFYGRDSEDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVM
NSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNNQA
WARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNLFQLMHRKARGDEVSNDKFGGKNYCAESNG
NAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEGGVSQSAYNTLASLDLPKPEQGPETINQVTEHKMSAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85238.1 hypothetical protein Not tested PAI V 536 Protein 0.0 92
VC0395_A0370 YP_001216326.1 lipoprotein Not tested VPI-1 Protein 0.0 49
VC0845 NP_230493.1 hypothetical protein Not tested VPI-1 Protein 0.0 49
acfD AAK20802.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75646.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75664.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75670.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75667.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75661.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75658.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75649.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75652.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75655.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yghJ YP_006170072.1 Putative lipoprotein acfD-like protein precursor VFG0106 Protein 0.0 49