Gene Information

Name : KO11_04405 (KO11_04405)
Accession : YP_006163219.1
Strain : Escherichia coli KO11FL
Genome accession: NC_017660
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 942511 - 943734 bp
Length : 1224 bp
Strand : -
Note : COG0582 Integrase

DNA sequence :
ATGAAGCTAACAGTCAGACAAATAGACACAGCCAAGCCCAAAGAGAAGCCGTACAAGTTATCTGATGGTGGAGGCCTCTA
CCTTGAAGTAACCACCAACGGCTCACGCTACTGGCGTTTAAAGTATCGTTATGCGGGTAAAGAAAAGCGCCTTGCTTTCG
GCGTTTATCCTGAGGTTTCTCTCGCTGAAGCCCGTGAAAAGCGTGAAGCTGCGAAAAAGTTACTATCTGCTGGAAGCGAT
CCCGGAGAGCTAAAGAAAGCAGAGAAAATCGCTCAAAAACTTAACTACGAAAATACCTTCGAAGCTATTGCCCGTGAATG
GCACCATCTGAGAGCGGATCGTTGGTCATTACGTTATCGCGATGAAATTATTGATACCTTTGAAAAGGATATTTTCCCCT
ACATCGGTAAGCGTCCCATAGCTGAAATTAAGCCTATGGAATTGCTGGAAACCCTTCGCAGAATGGAAAAACGCGGCGCG
TTAGAAAAGATGCGCAAAGTTAGGCAGCGCTGCGGTGAAGTATTCCGTCATGCAATTGTGACCGGACGCGCTGAATACAA
TCCTGCCCCCGATCTCGCTACAGCCCTCGCAACACCAAAGAAAACGCATTTTCCTTTTCTGACTGCCGAAGAACTCCCTC
ATTTTCTGAGAGATCTTTCAGGCTATACCGGGAGTGTTATTACCAAGACTGCAACACAAATCATCATGCTTACAGGGGTA
CGAACTCAGGAATTACGTTTTGCCCGCTGGGAGGATATCAATTTTGAAAAGCGGCTTTGGGAGATCCCTGCTGAAGTGAT
GAAGATGAAACGACCTCATATCGTTCCGATGTCGGATCAGGTTGTCGAGCTCTTTAAGTCACTTAAACCTATTACCGGGC
TATACCCACTGGTATTCGTCGGACGCAATGATCGAACGAAGCCGATCTCAAAAGAGAGCGTTAATCAGGTGATTGAGTTG
TTGGGATATAAAGGAAGGCTGACGGGGCATGGTTTCCGCCACACGATGAGCACCATTCTTCATGAAGAAGGCTTTAACTC
AGCGTGGATTGAAACGCAGCTTGCGCATGTGGATAAGAACGCGATACGTGGGACATATAACCATGCGCAGTACTTGGAGG
GGCGTAAGGTGATGATGCAGTGGTATGGGAATTATCTTAACAGTCTTATTGTTGATAGAGATAGTTCAATATCCTTTCCA
CACCTAAAAACCATCAATATGTAA

Protein sequence :
MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVSLAEAREKREAAKKLLSAGSD
PGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGA
LEKMRKVRQRCGEVFRHAIVTGRAEYNPAPDLATALATPKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV
RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVELFKSLKPITGLYPLVFVGRNDRTKPISKESVNQVIEL
LGYKGRLTGHGFRHTMSTILHEEGFNSAWIETQLAHVDKNAIRGTYNHAQYLEGRKVMMQWYGNYLNSLIVDRDSSISFP
HLKTINM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-148 82
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-148 82
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-148 82
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-149 81
int AAD44730.1 Int Not tested SHI-2 Protein 4e-148 81
int CAC39282.1 integrase Not tested LPA Protein 1e-148 81
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-147 80
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-147 80
int ACU09430.1 integrase Not tested LEE Protein 1e-147 80
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-147 80
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 8e-114 62
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-113 61
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-67 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-67 43
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-67 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-67 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-66 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-66 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-66 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-67 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-67 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-66 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-65 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-66 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 9e-66 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-66 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-66 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-66 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-66 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-66 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-66 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-66 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-66 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KO11_04405 YP_006163219.1 hypothetical protein VFG0598 Protein 2e-148 82
KO11_04405 YP_006163219.1 hypothetical protein VFG0783 Protein 8e-148 80
KO11_04405 YP_006163219.1 hypothetical protein VFG0626 Protein 2e-67 41
KO11_04405 YP_006163219.1 hypothetical protein VFG1693 Protein 5e-67 41