Gene Information

Name : gspC (KO11_07860)
Accession : YP_006163905.1
Strain : Escherichia coli KO11FL
Genome accession: NC_017660
Putative virulence/resistance : Virulence
Product : putative type II secretion protein GspC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1669809 - 1670768 bp
Length : 960 bp
Strand : +
Note : COG3031 Type II secretory pathway, component PulC

DNA sequence : 
TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACAAAAATTCGTCACACTCTTAACCAGAG
ACAATCTTTTAATACAGACAAAGAGCATCTGCGAAAAATTGTACGCGGGATGTTCTGGCTGATGCTGCTTATTATTTCTG
CAAAAGTGGCGCATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCTGTTTCCCCATCGGCGAATAAACCG
CCCCGTGCGGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCAGCCAGCAAAACTGGTTTGGCAAATATCAGCC
CGTCGCCACGCCGGTAAAACAACCCGAACCTGTGCCTGTGGCAGAAACGCGTCTTAATGTGGTGCTGCGCGGGATTGCCT
TTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGCGGTAAACAGCAGGTCTATTTGCAGGGTGAAACGCTTGGCTCGCAC
AATGCGGTGATTGAGGAAATCAATCGCGACCATGTGATGCTGCGCTATCAGGGAAAAATAGAGCGCCTGAGCCTGGCAGA
AGAGGGGCATTCCACCGTAGCCGTGACCAACAAAAAAGCTGTCAGTGACGAAGCAAAGCAAGCTGTTGCTGAACCTGCTG
TCAGTGCGCCAGTGGAGATCCCGACTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAGGGAATTGTCGGTTATGCAGTGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG
TTTCAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCCACGACATTTCCATCGCGCTGCGCTAA

Protein sequence : 
MARVVFRDARIYLIQWLTKIRHTLNQRQSFNTDKEHLRKIVRGMFWLMLLIISAKVAHSLWRYFSFSAEYTAVSPSANKP
PRADAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSH
NAVIEEINRDHVMLRYQGKIERLSLAEEGHSTVAVTNKKAVSDEAKQAVAEPAVSAPVEIPTAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 5e-118 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspC YP_006163905.1 putative type II secretion protein GspC VFG2046 Protein 1e-116 94