Gene Information

Name : sitB (NRG857_30258)
Accession : YP_006162317.1
Strain :
Genome accession: NC_017659
Putative virulence/resistance : Virulence
Product : iron/manganese transport system inner membrane protein SitB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 124682 - 125506 bp
Length : 825 bp
Strand : -
Note : Sequence similarity to: YP_001739971.1 iron/manganese transport system membrane protein SitB [Escherichia coli SMS-3-5]; pfam00005, ABC_tran, ABC transporter

DNA sequence : 
ATGCAATCTGCAGGCATTGTCGTTAATGATGTTACTGTCACCTGGCGTAACGGGCACACAGCACTGCGCGATGCATCCTT
CACAGTACCAGGCGGATCTATTGCCGCTCTGGTTGGGGTAAACGGTTCCGGAAAATCGACGTTGTTTAAAGCGATTATGG
GATTTGTGCGTCTGACCAGCGGGAAGATATCTGTTCTGGGTATTCCCACACGACAGGCGCTACAGAAAAACCTGGTTGCC
TACGTCCCTCAGTCAGAAGAGGTTGACTGGTCATTTCCTGTACTGGTGGAAGATGTGGTGATGATGGGCCGCTATGGGCA
TATGGGTATGTTGCGTATCGCCAAAAAGAGGGATCGTCAGATTGTCACCGATGCGCTGGAACGTGTCGATATGGTGGATT
TTCGCCATCGACAAATCGGCGAGCTTTCCGGTGGACAAAAGAAACGCGTCTTTCTGGCGAGAGCGATTGCACAGCAGGGT
GATGTGATCCTGCTGGATGAACCTTTTACCGGCGTTGATGTGAAAACCGAAGCGAAAATCATCAGCCTGTTGAGGGAGTT
ACGCGCGGAAGGCAAAACGATGCTTGTCTCAACGCACAATCTCGGATCCGTCACGACATTTTGCGATTATACGGTCATGG
TCAAAGGCACCGTCCTGGCAAGCGGGCCGACAGACACCACTTTTACAGCCGAGAACCTGGAGCTGGCTTTTAGCGGCGTA
CTGCGCCATGTCACACTTAACGGCTCGGAAGAAAGCATTATTACTGACGATGAACGCCCTTTTGTGGCACATCGACCGTC
AGCGGTGCAGAGGGAAGAAAGATGA

Protein sequence : 
MQSAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVA
YVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQG
DVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSGV
LRHVTLNGSEESIITDDERPFVAHRPSAVQREER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-102 78
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-102 78
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-101 77
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-101 77
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-101 77

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_006162317.1 iron/manganese transport system inner membrane protein SitB BAC0350 Protein 2e-101 77
sitB YP_006162317.1 iron/manganese transport system inner membrane protein SitB BAC0440 Protein 5e-81 62
sitB YP_006162317.1 iron/manganese transport system inner membrane protein SitB BAC0400 Protein 3e-45 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_006162317.1 iron/manganese transport system inner membrane protein SitB VFG0526 Protein 2e-101 77