Gene Information

Name : sitD (NRG857_30253)
Accession : YP_006162315.1
Strain :
Genome accession: NC_017659
Putative virulence/resistance : Virulence
Product : iron/manganese transport system inner membrane protein SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 122974 - 123831 bp
Length : 858 bp
Strand : -
Note : Sequence similarity to: YP_444051.1 SitD [Escherichia coli]; pfam00950, ABC-3, ABC 3 transport family

DNA sequence : 
ATGATGGCATTATTACTGGAGCCACTGCAGTTCACCTTTATGAGTCACGCACTGCTGATTTCACTGGTAGTTTCCATACC
CTGTGCGCTGCTGTCGGTCTTTCTGGTCCTGAAAAGTTGGGCACTGATGGGTGACGCGATGAGTCATGCGGTTTTTCCTG
GCATCGTGCTTGCCTGGATTCTGGGGTTACCTCTGGCTACAGGGGCATTCGTCGCCGGAGTATTCTGTGCGGTGGCGACG
GGATACCTGAAAGACAACAGCCGAATCAAGCAAGATACAGTGATGGGGATTGTTTTTTCTGGCATGTTTGCCGCAGGTCT
GATCTTGTATATTGCAGTCAAACCAGACGTACATCTTGATCATATTCTTTTCGGCGACATGCTCGGGATAACCATCGGCG
ATATAATCCAGACGGTGATTATTGCCGGACTGGTTACACTTGTTATTAGCGTAAAATGGCGGGATTTTTTGCTGTTCAGC
TTTGATTATCAACAGGCGCAGGCAAGCGGTTTGCATACGAGATGGCTGCATTATGGGCTGCTGTGCATGGTCTCCCTGAC
CATTGTGGCGACGCTGAAAGCGGTAGGTATCATTCTCTCTATTTCTCTTCTCATTGCGCCTGGTGCCATTGCGGTACTCC
TGACACAACGCTTTCATATTGCGCTCCTGCTGGCGACTGGCATATCGATATTGGTCTCAATGACTGGTGTCTGGCTGTCC
TTTTTTATCGACAGCGCGCCAGCTCCGACAATTGTTGTCTTATTCGCGGTCATGTTCATCATGACGTTTACCGTTACCAG
CATCAACGCACGCACAAAGGAAAATGCCGAACCACGGGATTTGTTATCATCCGATTAG

Protein sequence : 
MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKSWALMGDAMSHAVFPGIVLAWILGLPLATGAFVAGVFCAVAT
GYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAVKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
FDYQQAQASGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLATGISILVSMTGVWLS
FFIDSAPAPTIVVLFAVMFIMTFTVTSINARTKENAEPRDLLSSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-76 67
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-75 67
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-75 67
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-75 67
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-76 67

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_006162315.1 iron/manganese transport system inner membrane protein SitD BAC0352 Protein 3e-76 67
sitD YP_006162315.1 iron/manganese transport system inner membrane protein SitD BAC0442 Protein 2e-55 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_006162315.1 iron/manganese transport system inner membrane protein SitD VFG0528 Protein 3e-76 67