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Name : shiF (NRG857_30245) Accession : YP_006162312.1 Strain : Genome accession: NC_017659 Putative virulence/resistance : Virulence Product : transporter Function : - COG functional category : - COG ID : - EC number : - Position : 119778 - 120971 bp Length : 1194 bp Strand : + Note : Sequence similarity to: YP_001481329.1 ShiF [Escherichia coli APEC O1] DNA sequence : ATGTCATCTAAGATCGAAGATACGCCCCAAAAAACCCTGTCCTGCTGGCCACTGGCGTTCAGTGCCGGTCTTCTCGGTAT CGGACAGAACGGTCTGCTGGTTGTACTCCCTGTTCTGGTCATACAGACAAATCTGAGTCTGTCTGTATGGGCTGCCCTGC TGATGCTGGGCTCAATGCTGTTTCTGCCATCTTCCCCATGGTGGGGAAAGCAAATTTCCCTTACTGGCAGTAAGACTGTG GTGCTGTGGGCTCTGGGAGGATATGGCGTAAGCTTTACCCTGCTTGGGCTGGGAAGTGTGCTGATGGCTACCGGTGCCGT AACAACAGCGGTGGGGTTGGGAATATTAATCATCGCCCGGATCGTCTACGGTCTGACCGTGTCAGCAATGGTGCCAGCCT GTCAGGTCTGGGCATTGCAGAGAGCGGGAGAAGGGAATCGCATGGCCGCTCTGGCAACCATCAGCTCCGGCCTGAGCTGC GGCAGGCTATTCGGGCCGCTGTGCGCGGCGGCAATGTTGGTCATTCACCCTCTGGCGCCAGTGTGGATGCTGATGGCAGC TCCGGTGTGGGCTGTGGTGATGCTTCTGCGGTTGCCCGGCACACCACCACAGCCCACACCGGAGCGCAAGAGCGTCAGCC TGAAGCGGGATTGCCTGCCTTATCTGCTTTGCGCAATGTTACTGGCTGCGGCAATGAGCATGATGCAGCTTGGACTTTCG CCAGCCCTTACTCGCCAGTTCGATACTGATACCACCACTATTAGCCAACAGGTGGCGTGGTTGTTGGGGCTGTCCGCAAT AGCTGCGCTTATCGCGCAGTTCGTGGTACTCCGTCCACAGCGCCTGACTCCAGTGGCTCTGCTCCTGAGTGCCGGGGTGT TGATGAGTAGTGGTCTGGCTATCATGCTCACTGAACAGCTATGGTTGTTTTACCTGGGCTGTGCAGTGCTGTCATTTGGG GCCGCTCTGGCAACACCCGCTTATCAACTTTTACTGAATGATAAGCTGGCCGACGGCGCAGGCGCGGGCTGGCTTGCGGC CAGTCACACACTTGGCTATGGGCTGTGCGCATTGTTGGTGCCACTGGCGTCGAAAACAGGTGTCTCAATCGCGCTGATTG TGACGGCATTATTTGCCGCTGTATTATTTACCATAGTGTCTGCATGTATTTGGCATTACCGTACAATCAAGTAA Protein sequence : MSSKIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTNLSLSVWAALLMLGSMLFLPSSPWWGKQISLTGSKTV VLWALGGYGVSFTLLGLGSVLMATGAVTTAVGLGILIIARIVYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC GRLFGPLCAAAMLVIHPLAPVWMLMAAPVWAVVMLLRLPGTPPQPTPERKSVSLKRDCLPYLLCAMLLAAAMSMMQLGLS PALTRQFDTDTTTISQQVAWLLGLSAIAALIAQFVVLRPQRLTPVALLLSAGVLMSSGLAIMLTEQLWLFYLGCAVLSFG AALATPAYQLLLNDKLADGAGAGWLAASHTLGYGLCALLVPLASKTGVSIALIVTALFAAVLFTIVSACIWHYRTIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| imm | NP_839224.1 | membrane transport protein | Not tested | SHI-2 | Protein | 6e-126 | 92 |
| imm | NP_709453.1 | membrane transport protein | Not tested | SHI-2 | Protein | 6e-126 | 92 |
| shiF | AAD44744.1 | ShiF | Virulence | SHI-2 | Protein | 5e-126 | 92 |
| shiF | YP_002414047.1 | putative membrane transport protein, major facilitator superfamily | Not tested | Not named | Protein | 1e-125 | 91 |
| unnamed | AAD54670.1 | unknown | Not tested | SHI-2 | Protein | 1e-125 | 91 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| shiF | YP_006162312.1 | transporter | VFG0614 | Protein | 3e-126 | 92 |
