Gene Information

Name : ECO55CA74_03180 (ECO55CA74_03180)
Accession : YP_006157808.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein FimC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 688536 - 689228 bp
Length : 693 bp
Strand : +
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAATCATTTCGGCCAGCGTCCATGCTGCCGGAGGGAT
CGCATTAGGTGCCACGCGTATTATTTATCCCGCTGATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATG
AGCGTTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTATTT
GTTAGTGAACCCAAAAGCGAAAATACTTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTT
CTGGATGAATGTTAAGACGATTCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTAT
CGCTCATGAAGTTATTTCTCCGTCCAATTCAACTACAAGAATTACCCGCAGAAGCGCCGGATACACTCAAGTTTTCGCGA
TCCGGTAACTATATCAATGTTCATAATCCATCACCTTTTTATGTCACCCTGGTTAACTTACAAGTGGGCAGCCAAAAGTT
GGGGAATGCTATGGCTGCACCCAGAGTTAATTCACAAATTCCCTTACCCTCAGGAGTGCAGGGAAAGCTGAAATTTCAGA
CCGTTAATGATTATGGTTCAGTAACCCCGGTCAGAGAAGTGAACTTAAACTAA

Protein sequence : 
MMTKIKLLMLIIFYLIISASVHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSLMKLFLRPIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 1e-44 47
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 9e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_03180 YP_006157808.1 fimbrial chaperone protein FimC VFG0445 Protein 2e-70 62
ECO55CA74_03180 YP_006157808.1 fimbrial chaperone protein FimC VFG0875 Protein 5e-48 47
ECO55CA74_03180 YP_006157808.1 fimbrial chaperone protein FimC VFG1644 Protein 5e-41 42
ECO55CA74_03180 YP_006157808.1 fimbrial chaperone protein FimC VFG0911 Protein 8e-41 42