Gene Information

Name : ECO55CA74_24650 (ECO55CA74_24650)
Accession : YP_006162017.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5164509 - 5165234 bp
Length : 726 bp
Strand : +
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
GTGAGTAATAAAAACGTCAATGTAAGGAAATCGCAGGAAATAACATTCTGCTTGCTGGCAGGTATCCTGATGTTCATGGC
AATGATGGTTGCCGGACGCGCTGAAGCGGGAGTGGCCTTAGGTGCGACTCGCATAATTTATCCGGCAGGGCAAAAACAAG
TGCAACTTGCCGTGACAAATAATGATGAAAATAGTACCTATTTAATTCAATCATGGGTGGAAAATGCCGATGGTGTAAAG
GATGGTCGTTTTATCGTGACGCCTCCTCTGTTTGCGATGAAGGGAAAAAAAGAGAATACCTTACGTATTCTTGATGCAAC
AAATAACCAATTGCCACAGGACCGGGAAAGTTTATTCTGGATGAACGTTAAAGCGATTCCGTCAATGGATAAATCAAAAT
TGACTGAGAATACGCTACAGCTCGCAATTATCAGCCGCATTAAACTGTACTATCGTCCGGCTAAATTAGCGTTGCCACCC
GATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACTCTATTACCTGAC
GGTAACAGAGTTGAATGCCGGAGCCCGGGTTCTTGAAAATGCCTTGGTGCCTCCAATGGGCGAAAGCACGGTTAAATTGC
CTTCTGATGCGGGAAGCAATATTACTTACCGAACAATAAATGATTATGGTGCACTTACCCCCAAAATGACGGGCGTAATG
GAATAA

Protein sequence : 
MSNKNVNVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATRIIYPAGQKQVQLAVTNNDENSTYLIQSWVENADGVK
DGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPP
DQAAEKLRFRRSANSLTLINPTLYYLTVTELNAGARVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVM
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 8e-83 83
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-69 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_24650 YP_006162017.1 chaperone protein FimC VFG0875 Protein 6e-109 98
ECO55CA74_24650 YP_006162017.1 chaperone protein FimC VFG0911 Protein 8e-70 65
ECO55CA74_24650 YP_006162017.1 chaperone protein FimC VFG1644 Protein 1e-69 65
ECO55CA74_24650 YP_006162017.1 chaperone protein FimC VFG0445 Protein 8e-53 48