|
Name : ECO55CA74_21230 (ECO55CA74_21230) Accession : YP_006161351.1 Strain : Escherichia coli RM12579 Genome accession: NC_017656 Putative virulence/resistance : Virulence Product : escV Function : - COG functional category : - COG ID : - EC number : - Position : 4402972 - 4404999 bp Length : 2028 bp Strand : - Note : COG4789 Type III secretory pathway, component EscV DNA sequence : ATGAATAAACTCTTAAATATATTTAAAAAAGCAGAGTCATATCACGATCTTATTCTGGCTCTCTTCTTCTTTATGGCTGT AATGATGATGATTATTCCACTACCAACAGTTGTGGTGGATATCATTATCGCGATTAATATTTCGACAGCTTTACTTTTAT TAATGCTCTCAATCTATATAAAAAATCCTCTTGAACTAACTTCTTTCCCCACAATCCTGTTGATTACGACGTTGATGCGC CTGTCGCTCAGTGTTAGTACAACCAGACTTATTCTGCTGCATCACGATGCGGGTGACATTATTTACTCCTTCGGTAACTT TGTTGTTGGCGGTAATATTGTTGTTGGCCTGGTTATTTTTACTATTATCACCATTGTTCAATTTATGGTTATTACAAAAG GGGCCGAGCGTGTTGCTGAAGTGAGTGCTCGTTTTTCCCTTGATGGTATGCCAGGAAAGCAAATGAGTATTGATGGTGAT ATGCGCGCAGGCGTTATTGACCCGCTTGAGGCAAAAGTTCTTCGCTCCCGAGTGCAAAAGGAAAGCCAGTTTTATGGTTC AATGGACGGGGCGATGAAGTTTGTAAAAGGGGACGCTATTGCTGGTATCATTATTGTTTTAGTTAACCTTTTTGGTGGCG TGCTCATTGGTATGTGGCAATTTGACATGCCATTTAGTGCGGCACTTAGCCTGTTTTCTGTATTGTCTGTCGGTGATGCT TTGGTTGCCCAGATCCCTGCGCTTATTATTTCTGTCACCGCGGGCGTGGTTGTTACTCGTGTGCCCGGTGAAAGCGAAAA AGAAGAAAACCTTGCAGGTGATATTGTTCAACAGGTTTCTGTTAATAGTCGCCCTTTTTTAATCAGTGCCGCACTAATGC TCGTAATGGCGATTATTCCGGGCTTTCCTGCATTGGTCTTCTTATTTCTGGCGGTTTGCCTGTTGGGGATAGCCTGGAAA TTACAGAAGAAAAGAACATTTGGAACTGGCAATAATAAGGATGCTATGGGAGCTGATTTGTCTAATAGCCAAAACATCTC ACCGGGCGCTGAGCCATTGATTTTAAACTTAAGTAGTAATATTTATAGTTCAGACATTACACAGCAAATTGAGGTCATGC GTTGGAATTTCTTTGAGGAAAGTGGAATTCCATTGCCTAAGATTATTGTTAATCCGGTTAAAAATAATGATAGCGCAATA GAATTTTTGCTCTATCAAGAGTCAATATACAAAGATACTCTTATAGATGATACTGTCTATTTTGAGGCTGGGCATGCAGA GATATCATTCGAATTTGTCCAGGAAAAGCTTTCGACTAACTCTATCGTATATAAGACGAATAAGACTAATCAACAGCTCG CTCACCTTACAGGTATGGATGTTTATGCAACAACAAATGATAAGATAACGTTTTTGCTAAAGAAACTTGTATTGTCTAAT GCCAAAGAGTTCATCGGCGTACAAGAAACGCGTTATTTGATGGACATCATGGAGAGAAAATATAACGAGCTTGTGAAAGA GCTGCAGCGCCAGCTTGGTTTGAGCAAAATTGTTGACATCCTACAACGTCTCGTAGAGGAAAATGTCTCAATTAGAGACC TGAGAACTATCTTTGAGACGCTTATTTTTTGGTCAACAAAAGAAAAGGATGTGGTTATCTTGTGCGAATACGTTCGTATT GCCCTGCGTCGGCATATTTTAGGTCGCTATAGCGTTAGCGGTACACTTCTGAACGTTTGGCTTATTGGCTCTGATATTGA AAATGAGCTACGAGAGTCGATCAGACAAACGTCATCAGGTTCGTATCTGAATATCTCACCGGAGCGAACTGAGCAGATAA TTGGCTTCTTAAAAAATATCATGAATCCAACGGGGAACGGCGTCATTCTGACCGCTTTAGATATCAGGCGCTATGTGAAG AAAATGATTGAAGGTTCGTTCCCGTCAGTCCCCGTGCTCTCTTTTCAGGAGGTTGGGAATAATATCGAACTTAAAGTATT AGGAACGGTAAATGATTTCAGAGCATGA Protein sequence : MNKLLNIFKKAESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMR LSLSVSTTRLILLHHDAGDIIYSFGNFVVGGNIVVGLVIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGD MRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGDA LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIPGFPALVFLFLAVCLLGIAWK LQKKRTFGTGNNKDAMGADLSNSQNISPGAEPLILNLSSNIYSSDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAI EFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTNDKITFLLKKLVLSN AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRI ALRRHILGRYSVSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILTALDIRRYVK KMIEGSFPSVPVLSFQEVGNNIELKVLGTVNDFRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 0.0 | 100 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 0.0 | 100 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 0.0 | 100 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 0.0 | 100 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 0.0 | 99 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 0.0 | 99 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 0.0 | 98 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 0.0 | 98 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 0.0 | 98 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 0.0 | 98 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 0.0 | 98 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 0.0 | 98 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 0.0 | 95 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 0.0 | 79 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 0.0 | 79 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 3e-116 | 49 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 3e-123 | 49 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 3e-123 | 49 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 9e-124 | 49 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-123 | 49 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-123 | 49 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 1e-103 | 42 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 1e-83 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECO55CA74_21230 | YP_006161351.1 | escV | VFG0813 | Protein | 0.0 | 100 |
| ECO55CA74_21230 | YP_006161351.1 | escV | VFG0729 | Protein | 0.0 | 99 |
| ECO55CA74_21230 | YP_006161351.1 | escV | VFG0514 | Protein | 5e-124 | 49 |
| ECO55CA74_21230 | YP_006161351.1 | escV | VFG1780 | Protein | 3e-89 | 41 |
| ECO55CA74_21230 | YP_006161351.1 | escV | VFG1006 | Protein | 5e-87 | 41 |
| ECO55CA74_21230 | YP_006161351.1 | escV | VFG0064 | Protein | 3e-102 | 41 |
