Gene Information

Name : ECO55CA74_21165 (ECO55CA74_21165)
Accession : YP_006161338.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : secreted protein EspD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4387945 - 4389069 bp
Length : 1125 bp
Strand : -
Note : -

DNA sequence : 
ATGCTTAACGTAAATAACGATACCCTGTCTGTAACGTCTGGGGTTAATACCGCCTCGGGTACTTCTGGTATTACTCAATC
TGAAACGGGTTTATCGCTGGATTTACAACTGGTTAAATCCATGAACTCGTCAGCAGGCTGGACAGAAAGTAGCCCTTTAC
CGACGCCGCCGGCAGGTCACTCATTAGTGACGCCCTCTGCTGCTGAGGATGTCCTTAGTAAATTGTTTGGTGGTATTAGT
GGTGAGGTTACAAGTCGCACTGAGGAGGCAGAGCCACAGCGCACAAGCTATCCCTATCTCTCTCAGGTGAATACCGTTGA
CCCTCAGCAAATGATGATGATGGTCACTCTGTTATCCCTGGATACTTCCGCGCAGAAAGTCTCGAGTCTGAAAAACTCTA
ACGAGATTTATATGGATGGGCAAACTAAAGCGCTGGAGAATAAAACGCAGGAGTATAAAAAACAGCTCGAAGAACAACAG
AAAGCCGAAGAGAAATCACAAAAAAGTAAAATTGTTGGCCAGGTCTTTGGTTGGTTGGGCGTCGCATTAACAGCCGTTGC
CGCTGTTTTTAACCCAGCACTCTGGGCTGTTGTTGCCATTGGTGCAACAGCAATGGCACTGCAAACGGCAGTCGATGTAA
TGGGGGAAAATGCCCCTCAGGGATTAAAGACTGCAGCACAGGTCTTTGGCGGAATATCTATGGCCGCAAGCATTCTGACA
GCCGGCGTTGGCGGGGTGTCTTCACTGTTATCTAAATTTGGTAATGTTGCTAACAAAATTGGCTCAAGCGTTGTAAAAGT
CGTTGAGAAGGCGGCAGAAGCGCTGGTTAAAAACGTTTTTGCAAAAATCTCGACAGTGGCTGAGGGCGTTACGAACGGTA
TTCGTTCTGCCGGGACAACTGCGTTGAATAATGAGGCTGCGCAACTCCAAATGTTGTCTCAGTTAGCTGCTTTCGCGGTG
CAAAACTTAACTCGACAGAGTGAAAGCTTAGGTGAGAGTGCGAAGCTCGAGCTGGATAAAGCGGCAAGCGAGTTACAAAA
TCAGGCGAGCTATTTACAAAGTGTTTCTCAACTGATGTCCGATTCAGCACGGGTAAATAGTCGTATTGTTAGTGGCCGAA
TTTAA

Protein sequence : 
MLNVNNDTLSVTSGVNTASGTSGITQSETGLSLDLQLVKSMNSSAGWTESSPLPTPPAGHSLVTPSAAEDVLSKLFGGIS
GEVTSRTEEAEPQRTSYPYLSQVNTVDPQQMMMMVTLLSLDTSAQKVSSLKNSNEIYMDGQTKALENKTQEYKKQLEEQQ
KAEEKSQKSKIVGQVFGWLGVALTAVAAVFNPALWAVVAIGATAMALQTAVDVMGENAPQGLKTAAQVFGGISMAASILT
AGVGGVSSLLSKFGNVANKIGSSVVKVVEKAAEALVKNVFAKISTVAEGVTNGIRSAGTTALNNEAAQLQMLSQLAAFAV
QNLTRQSESLGESAKLELDKAASELQNQASYLQSVSQLMSDSARVNSRIVSGRI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
espD NP_290255.1 hypothetical protein Virulence LEE Protein 3e-136 100
ECs4555 NP_312582.1 protein EspD Virulence LEE Protein 3e-136 100
espD AAC31500.1 L0021 Virulence LEE Protein 2e-136 100
espD ACU09445.1 secreted protein EspD Virulence LEE Protein 2e-136 100
espD AAC38395.1 EspD Virulence LEE Protein 6e-106 75
espD YP_003223462.1 translocon EspD Virulence LEE Protein 2e-108 75
espD CAI43861.1 EspD protein Virulence LEE Protein 2e-109 75
espD AAK26728.1 EspD Virulence LEE Protein 1e-108 74
espD AAL57555.1 EspD Virulence LEE Protein 1e-108 74
espD YP_003232166.1 translocator EspD Virulence LEE Protein 2e-108 74
espD CAC81875.1 EspD protein Virulence LEE II Protein 1e-108 74
espD YP_003236075.1 translocon EspD Virulence LEE Protein 1e-104 73
unnamed AAL06382.1 EspD Virulence LEE Protein 1e-101 70
espD AFO66304.1 putative secreted protein EspD Not tested SESS LEE Protein 4e-81 63
espD AFO66388.1 putative secreted protein EspD Virulence SESS LEE Protein 4e-81 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_21165 YP_006161338.1 secreted protein EspD VFG0799 Protein 1e-136 100
ECO55CA74_21165 YP_006161338.1 secreted protein EspD VFG0743 Protein 3e-106 75