Gene Information

Name : ECO55CA74_20520 (ECO55CA74_20520)
Accession : YP_006161211.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : long polar fimbrial chaperone LpfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4253923 - 4254609 bp
Length : 687 bp
Strand : -
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGAAAAGTAAATTTGTTGCGTTGGCTCTCTCTCTGTTCCTTTCACAGTCAGTTCTGGCGGGTGGCGTCGGACTTAGCTC
TACTCGCGTAATTTATGATTGCAGTAAGAAAGAAGCCTCGCTGACCGTACAGAATAAAAGTAAGACGGAAGAGTTTCTTA
TCCAATCCTGGGTGGATGATGCCGCGGGCAGCAAAAAAACACCGTTTATTATTACGCCCCCACTATTCAAGCTTGATCCA
GAAAAGAACAATATTTTGCGTATTGTGAATATTACGCCCGGCCTGCCTCAGGATCGCGAATCGGTCTACTGGGTTAATGT
GAAAGCCATTCCATCTAAAAGTGACGACAGCGAAAACAAAAATGTTTTGCAGATTGCCGTTCGCACCCGAATCAAACTTT
TTTATCGCCCGGCAGGTTTAAAGGGTGATGTAAAAACCGCGCCAAATGAACTGCGATTTACGCGTAACGGTAATCAGCTC
CGCGTTGATAATCCGACAGTTTTTAATATTACCTTTAATCAATTTTTTGCGAATGACAAAGAAATTGAAAAAGCAGGCAT
GGTACCCGCTAAAGGGGCATTAAATATCACATTACCCGCCGGGGTAGGTAGCGTTTCTAAAATTAAATATAACACCATCA
ATGACTTTGGATCGTCAGCGGAAATGATCACTAAAAATGTTGATTGA

Protein sequence : 
MKSKFVALALSLFLSQSVLAGGVGLSSTRVIYDCSKKEASLTVQNKSKTEEFLIQSWVDDAAGSKKTPFIITPPLFKLDP
EKNNILRIVNITPGLPQDRESVYWVNVKAIPSKSDDSENKNVLQIAVRTRIKLFYRPAGLKGDVKTAPNELRFTRNGNQL
RVDNPTVFNITFNQFFANDKEIEKAGMVPAKGALNITLPAGVGSVSKIKYNTINDFGSSAEMITKNVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 4e-42 44
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 4e-40 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_20520 YP_006161211.1 long polar fimbrial chaperone LpfB VFG0455 Protein 1e-75 70
ECO55CA74_20520 YP_006161211.1 long polar fimbrial chaperone LpfB VFG0911 Protein 2e-40 44
ECO55CA74_20520 YP_006161211.1 long polar fimbrial chaperone LpfB VFG1644 Protein 2e-40 44
ECO55CA74_20520 YP_006161211.1 long polar fimbrial chaperone LpfB VFG0875 Protein 5e-41 43
ECO55CA74_20520 YP_006161211.1 long polar fimbrial chaperone LpfB VFG0445 Protein 3e-44 42