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Name : ECO55CA74_20515 (ECO55CA74_20515) Accession : YP_006161210.1 Strain : Escherichia coli RM12579 Genome accession: NC_017656 Putative virulence/resistance : Virulence Product : long polar fimbrial outer membrane usher protein LpfC Function : - COG functional category : - COG ID : - EC number : - Position : 4251321 - 4253894 bp Length : 2574 bp Strand : - Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGTCACGGAAGACCGTTTCACGTACTTTTTCTTCCTTTTCTATCTCTGTGGTGGCGGTTGCTGTTGCCAGCACGTTTTC TGCACATGCCGGAAAGTTTAACCCCAAATTCCTGGAGGACGTTCAGGGTGTGGGCCAGCATGTCGATTTAACGATGTTCG AAAAAGGCCAGGAACAGCAGTTACCCGGCATCTATCGTGTCTCTGTTTACGTCAATGAACAGAGAATGGAAACCCGCACA CTGGAATTTAAAGAGGCCACAGAAGCACAGCGCAAAGCGATGGGGGAATCCCTTGTGCCTTGCCTTAGCCGGACGCAACT GGCAGAGATGGGCGTGCGCGTTGAAAGCTTTCCGGCCCTCAATCTGGTGTCTGCCGAAGCCTGCGTACCGTTTGACGAAA TCATTCCCCTGGCCTCAAGCCATTTCGACTTCAGTGAACAAAAGCTGGTATTAAGTTTCCCTCAGGCGGCGATGCACCAG GTGGCGCGCGGCACGGTGCCGGAATCTTTATGGGACGAAGGTATCCCTGCGTTGCTGCTGGATTACAGTTTTAGCGGGAG CAACAGTGAATATGACTCGACGGGGTCTTCCAGCAGTTATGTCGATGATAATGGCACTGTTCATCATGATGATGGTAAAG ATACGCTAAAGAGCGACAGCTACTACCTCAACTTACGCAGCGGGCTGAACCTTGGCGCTTGGCGGTTACGGAATTACAGT ACCTGGAGCCATTCCGGTGGCAAAGCGCAGTGGGATAATATCGGTACGTCTTTGAGTAGGGCCATCATCCCTTTCAAAGC GCAATTAACAATGGGGGATACGGCGACCGCGGGGGACATTTTTGACAGCGTTCAGATGCGTGGCGCGATGTTAGCCTCTG ATGAAGAGATGCTGCCCGACAGCCAGCGAGGCTTTGCACCCATCGTTCGAGGGATCGCCAAAAGCAACGCCGAAGTCAGT ATTGAACAAAACGGCTACGTTATTTATCGCACCTATGTGCAGCCTGGTGCCTTTGAAATAAACGATCTTTACCCCACTGC AAACAGCGGTGATCTCACGGTCATTATTAAAGAAGCGGATGGCAGTGAACAACGCTTTATTCAGCCATTCTCATCGGTGC CAATTTTCCAGCGTGAAGGCCATCTCAAATATAGCTTTGCCGCAGGTGAATATCAGGCCGGGAATTATGACAGCGCCTCG CCGCGTTTCGGGCAGCTTGATCTGATCTACGGTTTACCGTGGGGGATGACGGCCTACGGCGGCGTATTAATCTCTAATAA TTACAATGCATTTGCATTAGGGATAGGGAAAAACTTTGGTTATATCGGGGCGATTTCCATTGATGTGACGCAGGCTAAAA GCGAACTGAATAACGATCGCGATAGCCAGGGACAATCTTATCGTTTCTTATATTCCAAGAGCTTCGAAAGCGGCACCGAT TTCCGCCTTGCGGGCTATCGGTACTTTACCAGCGGTTTCTATACCTTCCAGGAAGCCACCGATGTGCGCAGTGACGCTGA CAGCGACTATAACCGTTATCACAAGCGCAGCGAAATACAGGGTAACCTGACGCAGCAATTAGGGGCCTATGGCTCTGTTT ATTTAAATTTAACGCAGCAGGATTACTGGAACGACGCAGGTAAACAGAACACGGTATCGGCGGGTTACAACGGACGTATT GGCAAGGTCAGTTACAGTATTGCATATAGCTGGAATAAAAGCCCTGAATGGGATGAAAGCGATCGCTTGTGGTCTTTCAA TATTTCCGTTCCACTAGGCCGGGCCTGGAGTAACTATCGCGTCACGACCGACCAGGATGGTCGTACCAATCAACAGGTTG GGGTCAGCGGAACGCTGCTTGAGGATCGCAACCTGAGCTACAGTGTCCAGGAAGGCTACGCCAGCAACGGTGTGGGTAAC AGCGGTAACGCTAACGTTGGCTATCAGGGTGGGTCCGGTAATGTCAACGTAGGCTATAGCTACGGGAAAGATTACCGGCA GCTCAACTACAGCGTTCGCGGCGGCGTGATAGTTCATAGCGAAGGCGTGACGCTTTCCCAACCGCTAGGCGAAACCATGA CGCTCATCTCCGTACCCGGTGCGCGCAATGCCCGCGTGGTGAATAACGGCGGCGTTCAGGTTGACTGGATGGGTAACGCG ATCGTGCCTTATGCCATGCCGTATCGTGAAAACGAAATCTCACTGCGTAGCGATTCGTTGGGTGACGATGTTGACGTTGA AAATGCGTTCCAGAAAGTGGTGCCAACGCGTGGAGCGATTGTCAGAGCGCGTTTTGATACCCGCGTTGGTTACCGCGTAT TAATGACGCTGCTTCGTTCCGCGGGCAGCCCGGTGCCCTTTGGAGCAACGGCAACGCTAATCACCGATAAACAAAACGAG GTGAGCAGTATCGTTGGTGAAGAAGGACAGCTCTATATTAGCGGAATGCCAGAGGAAGGACGGGTATTGATTAAATGGGG TAATGACGCGTCGCAGCAATGCGTGGCGCCTTATAAATTATCCCTGGAATTAAAACAGGGCGGAATTATTCCTGTTTCGG CCAATTGCCAGTAA Protein sequence : MSRKTVSRTFSSFSISVVAVAVASTFSAHAGKFNPKFLEDVQGVGQHVDLTMFEKGQEQQLPGIYRVSVYVNEQRMETRT LEFKEATEAQRKAMGESLVPCLSRTQLAEMGVRVESFPALNLVSAEACVPFDEIIPLASSHFDFSEQKLVLSFPQAAMHQ VARGTVPESLWDEGIPALLLDYSFSGSNSEYDSTGSSSSYVDDNGTVHHDDGKDTLKSDSYYLNLRSGLNLGAWRLRNYS TWSHSGGKAQWDNIGTSLSRAIIPFKAQLTMGDTATAGDIFDSVQMRGAMLASDEEMLPDSQRGFAPIVRGIAKSNAEVS IEQNGYVIYRTYVQPGAFEINDLYPTANSGDLTVIIKEADGSEQRFIQPFSSVPIFQREGHLKYSFAAGEYQAGNYDSAS PRFGQLDLIYGLPWGMTAYGGVLISNNYNAFALGIGKNFGYIGAISIDVTQAKSELNNDRDSQGQSYRFLYSKSFESGTD FRLAGYRYFTSGFYTFQEATDVRSDADSDYNRYHKRSEIQGNLTQQLGAYGSVYLNLTQQDYWNDAGKQNTVSAGYNGRI GKVSYSIAYSWNKSPEWDESDRLWSFNISVPLGRAWSNYRVTTDQDGRTNQQVGVSGTLLEDRNLSYSVQEGYASNGVGN SGNANVGYQGGSGNVNVGYSYGKDYRQLNYSVRGGVIVHSEGVTLSQPLGETMTLISVPGARNARVVNNGGVQVDWMGNA IVPYAMPYRENEISLRSDSLGDDVDVENAFQKVVPTRGAIVRARFDTRVGYRVLMTLLRSAGSPVPFGATATLITDKQNE VSSIVGEEGQLYISGMPEEGRVLIKWGNDASQQCVAPYKLSLELKQGGIIPVSANCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 1e-157 | 43 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 3e-162 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECO55CA74_20515 | YP_006161210.1 | long polar fimbrial outer membrane usher protein LpfC | VFG0454 | Protein | 0.0 | 70 |
| ECO55CA74_20515 | YP_006161210.1 | long polar fimbrial outer membrane usher protein LpfC | VFG0876 | Protein | 8e-168 | 45 |
| ECO55CA74_20515 | YP_006161210.1 | long polar fimbrial outer membrane usher protein LpfC | VFG0446 | Protein | 4e-153 | 43 |
| ECO55CA74_20515 | YP_006161210.1 | long polar fimbrial outer membrane usher protein LpfC | VFG1645 | Protein | 2e-162 | 43 |
| ECO55CA74_20515 | YP_006161210.1 | long polar fimbrial outer membrane usher protein LpfC | VFG0912 | Protein | 6e-162 | 42 |
