Gene Information

Name : ECO55CA74_17560 (ECO55CA74_17560)
Accession : YP_006160628.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : putative type II secretion protein GspC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3643361 - 3644320 bp
Length : 960 bp
Strand : -
Note : COG3031 Type II secretory pathway, component PulC

DNA sequence : 
TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACAAAAATTCGTCACACTCTTAACCAGAG
ACAATCTCTTAATACAGACAAAGAGCATCTGCGCAAAATTGCACGCGGGATGTTCTGGCTGATGCTGCTTATTATTTCTG
CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCTCAATCGGTGAATAAACCG
ACCCGTGCGGATGCAAAAGCGTTCGATAAAAAAGATGCGCAATTAATCAGCCAGCAAAACTGGTTTGGCAAATATCAGCC
CGTCGCCGCACCGGTAAAACAACCCGAACCTGCGCCTGTGGCAGAAACGCGTCTTAATGTGGTGCTGCGCGGGATCGCCT
TTGGTGCCAGACCCGGCGCGGTCATTGAAGAAGGCGGTAAACAGCAGGTCTATTTGCAGGGTGAAACGCTTGGCTCGCAC
AACGCAGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGAAAAATAGAGCGCCTGAGCCTGGCTGA
AGAAGAGCGTTCCACCGTAGCCGTGACCAACAAAAAAGCCATCAGTGACGAAGTAAAGCAAGCTGTTGCTGAGCCTGCTG
TCAGTGCGCCAGTTGAGATCCCGACTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAGGGAATTGTCGGTTATGCAGTGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG
TTTTAAGGAAGGCGATATCGCCATTGCACTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCCACGACATTTCCATCGCGCTGCGCTAA

Protein sequence : 
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSQSVNKP
TRADAKAFDKKDAQLISQQNWFGKYQPVAAPVKQPEPAPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSH
NAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAISDEVKQAVAEPAVSAPVEIPTAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-110 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_17560 YP_006160628.1 putative type II secretion protein GspC VFG2046 Protein 1e-109 94