Gene Information

Name : ECO55CA74_17490 (ECO55CA74_17490)
Accession : YP_006160614.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3631285 - 3631566 bp
Length : 282 bp
Strand : -
Note : COG3311 Predicted transcriptional regulator

DNA sequence :
TTGTTCATTAAGTCACCTGTTTTGTGTTGTGGTGAGGATATCACCTTTAATCAGGTGGCCAAATTTACTGTGCCACTACA
TACCCCGGTTTCGCTGATGGATGACCAGCTGGTCGACATGGCATTTATCACTCAACTGACCGGCTTAACCGATAAGTGGT
TTTATAAGCTCATCAGAGATGGTGCCTTTCCGGCCCCTATCAAAATGGGTCGCAGCTCCCGCTGGCTGAAAAGCGAAGTG
GAAGCCTGGCTGCAGGCACGCATTGCACAGTCCCGTCCGTAG

Protein sequence :
MFIKSPVLCCGEDITFNQVAKFTVPLHTPVSLMDDQLVDMAFITQLTGLTDKWFYKLIRDGAFPAPIKMGRSSRWLKSEV
EAWLQARIAQSRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3577 YP_003223438.1 transcriptional regulator Not tested LEE Protein 9e-27 98
unnamed CAE85187.1 hypothetical protein Not tested PAI V 536 Protein 7e-26 93
rox AAR97599.1 regulator of excision Not tested SHI-1 Protein 1e-25 89
S3190 NP_838473.1 hypothetical protein Not tested SHI-1 Protein 2e-25 89
SF2987 NP_708761.1 hypothetical protein Not tested SHI-1 Protein 2e-25 89
unnamed AAL08466.1 unknown Not tested SRL Protein 8e-26 83
unnamed CAI43835.1 hypothetical protein Not tested LEE Protein 8e-26 78
unnamed ADD91712.1 putative transcriptional regulator AlpA Not tested PAI-I AL862 Protein 8e-26 78
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 6e-18 63
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 4e-18 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_17490 YP_006160614.1 transcriptional regulator VFG0651 Protein 5e-26 89
ECO55CA74_17490 YP_006160614.1 transcriptional regulator VFG1057 Protein 3e-26 83
ECO55CA74_17490 YP_006160614.1 transcriptional regulator VFG1480 Protein 2e-18 63