Gene Information

Name : ECO55CA74_17465 (ECO55CA74_17465)
Accession : YP_006160609.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Unknown
Product : IS629 transposase orfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3629170 - 3630057 bp
Length : 888 bp
Strand : -
Note : COG2801 Transposase and inactivated derivatives

DNA sequence :
GTGAACTGCGCCGCAGTAACGATATCCTTCGCCAGACTTCCGCTTATATGCAGTGAACTGCATATTGCCCCGTCAACGTA
TTACCACTGTCAGCAACAGCGACATCGTCCTGATAAACGCAGTACCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGA
TACTGCGCGTATACGATGAGAATCATCAGGTATACAGTGTACGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCAGA
GTGGCCAGGTGCACTGTGGCACGTCTCATGGCGGTTATGGGGCTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGCACTAC
CGTCAGCCGGAAAGCCATTACCGCAGGCGACCGCGTAAACCGTCAGTTCGGGGCAGAACGTCCTGACCAGTTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCCGGATATATCGTG
GGATGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCTGGATGCACTGGAGCAGGCAGTATGGGACCGTCGTCCGTC
TGGCACTATCCATCACTGTGATAAAGGTTCTCTGTATGTATCGCTGGCCTACACGCAGCGGCTTAAGGAAGCAGGATTAC
TGGCATCAACAGGGAGCACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAATAGCTGGAAAAACCGGACAGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCGACG
ATTGCTGGGAAGGCTGGATCATATCCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCAGAAACGATGATCTGG
CAGCCTGA

Protein sequence :
MNCAAVTISFARLPLICSELHIAPSTYYHCQQQRHRPDKRSTRAQRDDWLKKEILRVYDENHQVYSVRKVWRQLLREGIR
VARCTVARLMAVMGLAGVLRGKKVRTTVSRKAITAGDRVNRQFGAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIV
GWRVSSSMETTFVLDALEQAVWDRRPSGTIHHCDKGSLYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRNSWKNRTEVELATLTWVDWYNNRRLLGRLDHIPPAEAEKAYYASIRNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 4e-90 94
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-89 93
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-103 93
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 7e-121 93
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-118 93
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-117 93
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-120 93
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-120 93
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-117 93
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-117 93
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-121 93
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-117 93
Z1221 NP_286756.1 transposase Not tested TAI Protein 7e-121 93
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-121 93
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-120 93
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-121 93
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-121 93
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-120 92
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-120 92
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-118 91
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-47 43
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_17465 YP_006160609.1 IS629 transposase orfB VFG1602 Protein 2e-118 91