Gene Information

Name : ECO55CA74_17415 (ECO55CA74_17415)
Accession : YP_006160599.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : DNA-directed RNA polymerase subunit beta/140 kD subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3619176 - 3619559 bp
Length : 384 bp
Strand : -
Note : COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit

DNA sequence : 
ATGTACGCAAAATCCTTTCTCGCACTTGATGGTAACGGACGTCTGACGGGGGCCCGTACCGCACATACTGCTCCTTATGC
CCACTACACCTGCCACTTGTGTGGCAGTGCACTCAGATACCACCCGCAATACGACACCGAACTGCCCTGGTTTGAACACA
CTGACGACGGGCTGACAGAGCACGGTCAACAGTGTCCTTATGTCAGACCGGAGCGCAAGGAGATACAACTGATTAAACGT
CTGCAGCAATTCGTACCGGATGCCTTACCCGTAGTACGTAAAGCCAGCTGGCACTGCAGGCAATGTCACCACGATTATTA
TGGGGAGCGGTACTGCACACACTGCCAGACCGGGCGCTTCAGTGAGGAGGGGGGAGCAGAATGA

Protein sequence : 
MYAKSFLALDGNGRLTGARTAHTAPYAHYTCHLCGSALRYHPQYDTELPWFEHTDDGLTEHGQQCPYVRPERKEIQLIKR
LQQFVPDALPVVRKASWHCRQCHHDYYGERYCTHCQTGRFSEEGGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3572 YP_003223433.1 hypothetical protein Not tested LEE Protein 5e-57 100
APECO1_1083 YP_853103.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 3e-52 95
unnamed CAI43833.1 hypothetical protein Not tested LEE Protein 6e-51 92
unnamed AAK00467.1 unknown Not tested SHI-1 Protein 7e-54 91
S3186 NP_838469.1 hypothetical protein Not tested SHI-1 Protein 1e-53 91
SF2981 NP_708755.1 hypothetical protein Not tested SHI-1 Protein 1e-53 91
aec60 AAW51743.1 Aec60 Not tested AGI-3 Protein 4e-53 90
unnamed ADD91715.1 hypothetical protein Not tested PAI-I AL862 Protein 2e-50 90
unnamed CAE85181.1 hypothetical protein Not tested PAI V 536 Protein 2e-49 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_17415 YP_006160599.1 DNA-directed RNA polymerase subunit beta/140 kD subunit VFG0645 Protein 3e-54 91