Gene Information

Name : ECO55CA74_01660 (ECO55CA74_01660)
Accession : YP_006157517.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Unknown
Product : Integrase for prophage CP-933I
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 348901 - 350082 bp
Length : 1182 bp
Strand : +
Note : COG0582 Integrase

DNA sequence :
ATGCCTTTAAACGATATGCAGATTCGCCGCGCTAAGCCTGAAGCTAAAGCCTATACACTTGGAGATGGGCTAGGGTTGTC
ATTACTTATAGAACCTAATGGAAGCAAGAGTTGGCGGTTCCGCTATCGCTATGCCGGCAAACCCAAAATGATCTCGCTTG
GTGTTTACCCAACGATCACCCTTGCCGATGCTCGTTCCCGTCGTGATGAAGCTCGAAAACTTGTGGCAGAAGGAAAGAAC
CCTAGTGAGGTTCGAAAAGAGCAAAAGCTAGCTATGCAAACAGAGTCAGAGAACGCCTTCGAAAAGATAGCCAGAGAGTG
GCATCAACTTAAATCTGCTAAATGGTCGGCGGGATATGCATCAGACATCATGGAAGCGTTTAAGAACGACATTTTTCCTT
ATGTCGGAACAAGGCCTGTGGGAGAGATTAAACCGCTAGAGCTGCTGAACGTTCTGCGTAAAATTGAGAAACGTGGTGCG
TTGGAGAAAATGCGCAAAGTGCGGCAGCGTTGCTCCGAAGTGTTTCGCTACGCAATTGCAACGGGTAGGGCGGAGTACAA
TCCTGCGGCTGATCTCTCCAGCGCTCTCGAAGTACACCAATCCAATCATTTCCCATTCCTAAAAGCTGATGAGATACCTG
ATTTTCTACGTGCCTTAGAGGGTTACTCCGGGAGTAAGCTTGTCCAGATAGCCACGAAATTACTGATGATTACGGGTGTG
AGAACCATCGAATTACGCGCGGCATTATGGCAAGAATTTGATCTGGATAACGCTATTTGGGAAATTCCTGCTGAAAGGAT
GAAAATGCGTAGGCCACATCTTGTGCCCTTATCATCTCAAGCGGTAGATTTACTCAATGAACTCAAGATCATGACAGGGA
ACTATCGTTATGTTTTTCCAGGGCGGAACGATCCGAATAGGCCAATGAGCGAAGCGAGTATAAATCAAGCCATTAAGCGT
ATTGGGTATGGAGGAAAAGTCACTGGACATGGTTTTCGTCATACCCTTTCTACAATCCTGCATGAGCAAGGTTTTGAGAG
TGCTTGGATTGAAATCCAGTTGGCTCATGTAGATAAAAATTCTATTAGGGGGACTTATAACCATGCTCAATATTTTAGTG
GAAGGAAGTCTATGATGGACTGGTACAGTAATTTGATATTTGAAAGACTAAAAAGGAGTTAA

Protein sequence :
MPLNDMQIRRAKPEAKAYTLGDGLGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTITLADARSRRDEARKLVAEGKN
PSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAGYASDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGA
LEKMRKVRQRCSEVFRYAIATGRAEYNPAADLSSALEVHQSNHFPFLKADEIPDFLRALEGYSGSKLVQIATKLLMITGV
RTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPLSSQAVDLLNELKIMTGNYRYVFPGRNDPNRPMSEASINQAIKR
IGYGGKVTGHGFRHTLSTILHEQGFESAWIEIQLAHVDKNSIRGTYNHAQYFSGRKSMMDWYSNLIFERLKRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-125 64
int CAC39282.1 integrase Not tested LPA Protein 2e-125 62
int AAD44730.1 Int Not tested SHI-2 Protein 1e-125 62
aec33 AAW51716.1 Int Not tested AGI-3 Protein 9e-126 62
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-125 62
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 8e-125 62
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 8e-125 62
int AAC31482.1 CP4-like integrase Not tested LEE Protein 9e-126 61
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-125 61
int ACU09430.1 integrase Not tested LEE Protein 9e-126 61
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-125 61
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 9e-122 59
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-75 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-75 42
BJAB0715_01002 YP_008216150.1 Integrase Not tested AbaR27 Protein 3e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_01660 YP_006157517.1 Integrase for prophage CP-933I VFG0598 Protein 3e-125 62
ECO55CA74_01660 YP_006157517.1 Integrase for prophage CP-933I VFG0783 Protein 5e-126 61