Gene Information

Name : ECO55CA74_14300 (ECO55CA74_14300)
Accession : YP_006159989.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Unknown
Product : prophage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2944449 - 2945606 bp
Length : 1158 bp
Strand : +
Note : COG0582 Integrase

DNA sequence : 
ATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCATACCGCCTACTCGATGGTAATGGCCTGTACCT
TTATGTCCCTGTATCAGGGAAAAAGGTATGGCAGCTTCGCTACAAGATTGACGGTAAGGAGAAAATCCTGACCGTCGGAA
AATATCCGCTTATGACTTTGCAAGAGGCAAGGGATAAAGCATGGACTGCGAGGAAAGACATCTCGGTTGGCATCGATCCG
GTAAAGGCGAAAAAGGCTTCGTCTAACAACAATTCCTTTAGTGCGATTTACAAGGAATGGTACGAGCATAAGAGGCAAGT
CTGGTCAGCCGCCTATGCGACTGAACTTGCAAAAATGTTTGATGACGACATTTTACCTATCATCGGCGGCCTTGAAATTC
AGGATATTGAGCCGATGCAACTGCTGGAAGTAATCCGCAGATTTGAAGATCGCGGGGCAATGGAGCGAGCCAACAAAGCA
CGCAGAAGATGCGGCGAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCTGA
AGCCATGAAGGGATACCGCAAGAAGAACTTCCCGTTTTTACCTGCCGACCAGATCCCGGCATTCAACAAAGCACTTGCAA
CATTTTCAGGAAGTATCGTATCTCTCATTGCGACCAAAGTTTTACGCTACACAGCACTAAGAACGAAAGAGCTTCGTTCC
ATGCAATGGAAGAACGTCGATTTTGAAAACAGGATTATCACCATCGAGGCCAGTGTGATGAAGGGACGCAAGATTCATGT
GGTTCCGATGTCGGACCAGGTTGTTGAACTTCTCACTACGCTAAGCTCCATCACTAAACCAGTATCAGAGTTTGTTTTTG
CCGGGCGCAACGATAAGAAGAAGTCAATCTGTGAGAACGCTGTACTGCTTGTGATCAAACAAATCGGCTATGAAGGTCTG
GAAAGCGGTCACGGATTCAGGCATGAATTCAGCACGATTATGAACGAGCACGAATGGCCTGCTGACGCTATTGAAGTGCA
ACTAGCACATGCCAACGGCGGATCTGTGCGTGGGATTTACAACCATGCTCAGTATCTCGATAAGTGCAGAGAAATGATGC
AGTGGTGGGCGGACTGGCTTGATGGGAAGGTGGAGTAG

Protein sequence : 
MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP
VKAKKASSNNNSFSAIYKEWYEHKRQVWSAAYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKA
RRRCGEVFRYAIVTGRAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS
MQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKSICENAVLLVIKQIGYEGL
ESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKCREMMQWWADWLDGKVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-81 48
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-85 48
int ACU09430.1 integrase Not tested LEE Protein 2e-85 48
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-85 48
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-85 48
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-85 48
int AAD44730.1 Int Not tested SHI-2 Protein 9e-84 48
int CAC39282.1 integrase Not tested LPA Protein 5e-85 48
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-84 48
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-84 48
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-84 48
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-77 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_14300 YP_006159989.1 prophage integrase VFG0783 Protein 1e-85 48
ECO55CA74_14300 YP_006159989.1 prophage integrase VFG0598 Protein 2e-84 48