Gene Information

Name : ECO55CA74_07520 (ECO55CA74_07520)
Accession : YP_006158657.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : porcine attaching-effacing associated protein Paa/adherence factor AdfO
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1579116 - 1579862 bp
Length : 747 bp
Strand : +
Note : COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain

DNA sequence : 
ATGGCAGGTTTTTTAATATTCCTGTCTTCTGCTGCTTATGCTGATATCAATCTGTATGGTCCTGGTGGCCCGCATACAGC
CTTGCTTGATGCAGCCAAACTTTATGCCGAAAAAACAGGTATTATAGTGAACGTTCATTACGGCCCACAGAACAAATGGA
ATGAAGATGCCAAAAAAAATGCAGATATCTTGTTTGGCGCATCAGAACAATCTGCTCTGGCTATCATTCGGGACCATAAA
GACAGCTTCAGTGAAAAAGATATTCAGCCTCTTTATCTGCGAAAAAGTATTTTACTGGTAAAGAAAGGTAATCCTAAAAA
TATCCGGAGTATTGACGACCTGACCAGACCTGGGATTGGCGTAATTGTTAATGATGGTGGTGGTACCAGTAATACATCAG
GCACTGGCGTCTGGGAAGATATTGCCGGACGTAAAGGGAATATAGAAACTGTCGCCGCAATCCGAAAAAATATTATTTTA
TATGCGCCCAATAGCGGAACTGCACGTAAGGCTCTTGAGAATCAGCCTGGAGCAGATGTCTGGATAACCTGGGCTGACTG
GGCAGCCAGTAATCCAGAAATTGGTGATGTCGTGGAAATAGCGCCAGACTACGTGATATGGCGTGATATGAACATTACAG
TACGTCAGGATGCAAATGATGAAACCCGTCGATTTGCAGAATGGCTACAAACCGATGAAGCGGCGCCTGCATTCAAAAAA
TATGGCTGGACCAGGAAAGGCACTTGA

Protein sequence : 
MAGFLIFLSSAAYADINLYGPGGPHTALLDAAKLYAEKTGIIVNVHYGPQNKWNEDAKKNADILFGASEQSALAIIRDHK
DSFSEKDIQPLYLRKSILLVKKGNPKNIRSIDDLTRPGIGVIVNDGGGTSNTSGTGVWEDIAGRKGNIETVAAIRKNIIL
YAPNSGTARKALENQPGADVWITWADWAASNPEIGDVVEIAPDYVIWRDMNITVRQDANDETRRFAEWLQTDEAAPAFKK
YGWTRKGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 3e-55 51
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 3e-55 51
acfC AAA82706.1 AcfC Virulence VPI Protein 3e-55 51
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 4e-55 51
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 4e-55 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_07520 YP_006158657.1 porcine attaching-effacing associated protein Paa/adherence factor AdfO VFG0839 Protein 3e-105 100
ECO55CA74_07520 YP_006158657.1 porcine attaching-effacing associated protein Paa/adherence factor AdfO VFG0105 Protein 2e-55 51