Gene Information

Name : ECO55CA74_00690 (ECO55CA74_00690)
Accession : YP_006157325.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Virulence
Product : putative chaperone protein EcpD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 159832 - 160557 bp
Length : 726 bp
Strand : -
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGTTTCCCTTGGTTAAAAAAACGGTTAGTGCATTATTTGTGAGTACTCTGTTAGCCAGTGCACCAGCATTCGCTGACAT
TATTATTTCCGGAACACGTATCATTTATAACGCTGATAAAAAAGATGTTAACGTTCGTCTGGAAAATAAAGGGAATCGCC
CCTTACTGATTCAGAACTGGTTGGATACGGGCGATGACAATGCCGATCCCAGCCAGATCAAAGTGCCGTTTACCGCGACC
CCACCAGTTTCACGCGTGGAGCCAAAACGCGGTCAAACCGTAAAAGTGATGTATACCGGTGCAACAGCCCTGCCGAAAGA
CCGTGAAAGCGTCTACTGGTTTAACGTGCTGGAAGTGCCGCCTAAGCCGAAAGATGCTGAGGCTGACAAAAACTTGTTAC
AGCTGGCTTTCCGCACACGCATCAAACTCTTTTATCGCCTGAGTGGGTTACAGGGAGAACCGGCTGAAGCACCGGCGAAA
ATCACCTGGAAATTAAACAACGCTCAGTTACAGGCAAATAACCCAACGCCATATTACGTGTCCTTTAATGAGGTCAAGCT
GGAAAGCGGCGGCAAAACCTACAACGTCAATTCCAGCATGGTCACGCCGTTCAGCCAGGCAAGCTTTGGCGTAACCGGTC
TGCCAGGAAGCGTGTCATCCGGAAAAGTGGTCTTTAAAGCGATCAACGACTTTGGCGGCAACATTGATGGTTCCGCAACA
TTCTAA

Protein sequence : 
MFPLVKKTVSALFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLDTGDDNADPSQIKVPFTAT
PPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPKDAEADKNLLQLAFRTRIKLFYRLSGLQGEPAEAPAK
ITWKLNNAQLQANNPTPYYVSFNEVKLESGGKTYNVNSSMVTPFSQASFGVTGLPGSVSSGKVVFKAINDFGGNIDGSAT
F

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 2e-66 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_00690 YP_006157325.1 putative chaperone protein EcpD VFG0007 Protein 4e-40 42
ECO55CA74_00690 YP_006157325.1 putative chaperone protein EcpD VFG1145 Protein 3e-39 41