Gene Information

Name : ECO55CA74_06270 (ECO55CA74_06270)
Accession : YP_006158412.1
Strain : Escherichia coli RM12579
Genome accession: NC_017656
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system ATP-binding protein LolD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1341744 - 1342451 bp
Length : 708 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGCAATCTACTATTAAATCGTTGCCCGCTATTTCGCTTAGCAATATTTATAAGTGTTATGGCGCTGGGGCAGGAAAGGT
TGATGCGCTTAAAAGCATTAATCTTGATATCAATAAAGGCGAATTTCTCGCACTGTGTGGGCCGTCAGGCAGTGGTAAAA
GTACTCTGTTGAATATTCTCTCGGGTATTGATAAACCGACCAGCGGAACGGTGATATTTTTAAATAAATTACTGAACCAA
CTGCCAGAAGAGCAGTTGGCTGTGATTCGTGGAAAACATTTGGGTTTTATTTTTCAGTTTTTTAACCTTATGCCGGTATT
AAATGTTTTCGATAACGTTTATTTCCCACTGGTGCTTAATGGTCAGTTCAGTAAAAAAGAAGCCACTGAACGGACGCTGC
ATTATCTCGATAGTGTTGGATTAAGCGGTTTTGGCGATCGTAAACCTGGGCAACTATCGGGCGGTCAACAACAGCGTGTC
GCCATCGCCAGGGCACTGGCCCACGAACCGATGGTGGTCATTGCCGATGAACCGACGGGAAATTTAGACCTGGCAACCGG
CGAGGCTATTTTGGACCTGTTGTTGACGATTAATCAGCAGACCGGCACCACATTTGTTATTTCCACGCACTCCAGCGAAT
TAAAAGCGCGGGCACGGCGAGTGGTTGAAATTCAGGATGGAGTATTGATTCATGACTCAGATGCATAA

Protein sequence : 
MQSTIKSLPAISLSNIYKCYGAGAGKVDALKSINLDINKGEFLALCGPSGSGKSTLLNILSGIDKPTSGTVIFLNKLLNQ
LPEEQLAVIRGKHLGFIFQFFNLMPVLNVFDNVYFPLVLNGQFSKKEATERTLHYLDSVGLSGFGDRKPGQLSGGQQQRV
AIARALAHEPMVVIADEPTGNLDLATGEAILDLLLTINQQTGTTFVISTHSSELKARARRVVEIQDGVLIHDSDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-34 45
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-30 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO55CA74_06270 YP_006158412.1 lipoprotein-releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 3e-40 47
ECO55CA74_06270 YP_006158412.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 5e-35 43
ECO55CA74_06270 YP_006158412.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene598.p Protein 1e-38 42
ECO55CA74_06270 YP_006158412.1 lipoprotein-releasing system ATP-binding protein LolD NC_008702.1.4606598. Protein 1e-36 42