Gene Information

Name : yghJ (i14_3392)
Accession : YP_006155471.1
Strain : Escherichia coli clone D i14
Genome accession: NC_017652
Putative virulence/resistance : Virulence
Product : putative lipoprotein AcfD-like precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3400041 - 3404597 bp
Length : 4557 bp
Strand : -
Note : -

DNA sequence :
ATGAATAAGAAATTTAAATATAAGAAATCGCTTTTAGCGGCTATTTTGAGTGCAACCCTGTTAGCCGGTTGTGATGGCGG
TGGCTCCGGATCTTCCTCCGATACGCCGCCTGTAGATTCTGGAACAGGGTCTTTGCCGGAAGTGAAACCTGATCCAACAC
CAAACCCGGAGCCGACGCCTGAGCCAACGCCGGACCCAGAACCTACGCCGGAACCGACACCTGATCCTGAGCCAGAACCG
GAGCCAGAACCTGTTCCTACGAAAACGGGTTATCTGACCCTGGGCGGAAGCCAGCGGGTAACTGGTGCTACTTGTAATGG
TGAATCCAGCGATGGCTTTACATTTACACCTGGTGAGGACGTTACTTGCGTGGCGGGTAACACGACAATTGCTACCTTCG
ACACCCAGTCAGAAGCTGCGCGTAGCCTGCGTGCGGTTGAAAAAGTGTCGTTTAGTCTTGAGGACGCGCAAGAACTGGCA
GCTTCCGATGACAAGAAAAGCAATGCGGTTTCGCTGGTAACGTCCAGTAACAGCTGTCCGGCGAATACAGAACAGGTTTG
CCTGACGTTCTCCTCAGTGATCGAGAGTAAACGTTTCGACTCGCTGTATAAGCAAATCGATCTGGCACCGGAAGAGTTCA
AAAAGCTGGTCAATGAAGAGGTGGAAAACAATGCCGCGACCGATAAAGCGCCATCCACTCATACTTCACCGGTTGTGCCC
GTCACCACGCCGGGAACAAAACCGGATCTGAACGCTTCCTTCGTGTCGGCTAACGCGGAACAGTTTTATCAGTATCAACC
CACTGAAATCATTCTCTCCGAAGGCCGACTGGTAGATAGCATGGGCAATGGTGTGGTTGGCGTAAATTACTACACCAGCT
CAGGCCGTGGCGTAACTGGCGAAAACGGCAAATTCAACTTCAGCTGGGGCGAAACCATCTCCTTTGGTATCGACACCTTT
GAACTGGGCTCAGTGCGCGGCAATAAGTCGACCATTGCGTTGACTGAACTGGGTGACGAAGTTCGCGGCGCGAATATTGA
TCAGCTTATTCATCGTTACTCCCAGGCCGGAAAAAATGATGAGCGTGAAGTGCCGGACGTAGTGCGCAAGGTCTTTGCCG
AGTATCCCAACGTAATCAACGAGATTATCAATCTCTCGTTATCCAATGGCGAGGCGTTGAGCGAAGGCGATCAAACCTTT
GAGCGGACAAACGAATTTCTTGAGCAGTTTGAATCCGGGCAGGCTAAAGAGATTGATACGGCGATTTGTGACTCCCTTGG
GGGCTGCAACTCTCAGCGTTGGTTCTCGTTGACAGCACGCAATGTTAACGAAGGTCAGATTCAGGGCGTTATCAACAAGC
TGTGGGGTGTGGATAAAGATTACAAATCAGTGACGAAATTCCACGTCTTCCATGACTCTACCAACTTCTATGGCAGTACC
GGTAATGCGCGCGGTCAGGCAGTGGTGAATATCTCCAACGCGGCCTTCCCGATTCTGATGGCGCGTAATGATAAAAACTA
CTGGCTGGCGTTTGGCGAAAAACGCGCCTGGGATAAAAACGAGCTGGCGTACATTACGGAAGCGCCTTCTCTCGTTGAGC
CGGAAAACGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTTATTTCGCTGGGGCAAGTCGGTGAGGGCAAACTGATG
GTTATCGGTAACCCGCACTACAACAGCATTTTGCGTTGTCCGAACGGTTACAGCTGGGAAGGCGGTGTTGATAAAAACGG
TCAGTGTACGCGTAACAGTGATTCTAATGATATGAAGCACTTTATGCAGAACGTGTTGCGCTATCTGTCCGACGATAAAT
GGACGCCGGACGCGAAAGCCAGCATGACCGTAGGCACCAACCTGGATACTGTCTATTTCAAACGTCATGGTCAGGTTACA
GGAAACAGCGCTGAGTTCGGCTTTCATCCGGATTTTGCGGGTATCTCTGTTGAGCATTTAAGTAGCTATGGCGATCTCGA
CCCGCAGGAAATGCCGCTGCTGATCCTCAACGGCTTTGAGTATGTGACTCAGGTTGGTAACGATCCTTATGCAATCCCGC
TGCGAGCAGATACCAGCAAACCGAAGCTGACTCAGCAGGATGTGACCGATCTGATCGCCTATCTGAACAAAGGTGGATCG
GTGCTGATCATGGAAAACGTGATGAGCAATCTTAAGGAAGAGAGCGCGTCTGGCTTTGTACGTCTGCTTGATGCCGCAGG
TCTGTCGATGGCACTGAACAAGTCGGTAGTAAATAACGATCCGCAAGGGTATCCGAACCGCGTTCGTCAGCAGCGCGCAA
CGGGCATTTGGGTCTATGAACGTTATCCTGCCGTAGATGGTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTT
AAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAGCTGGCTGGAAGATGTAGATGG
CAAACAGGAAACGCGTTATGCCTTTATTGATGAGGCCGATCATAAAACAGAGGATTCTCTGAAGGCTGCGAAGGCAAAAA
TCTTTGAGAAGTTTCCTGGATTAAAGGAGTGTAAGGACCCAACTTACCACTACGAGGTCAACTGTCTGGAATATCGTCCT
GGCACGGGGGTTCCGGTTACTGGTGGCATGTATGTTCCACAGTATACGCAACTAAGCCTTAACGCCGACACGGCAAAAGC
GATGGTGCAGGCTGCGGATTTAGGCACCAACATTCAGCGTCTGTATCAGCATGAGCTCTACTTCCGGACCAATGGTCGCA
AAGGTGAGCGTCTGAGCAGCGTCGATCTGGAACGTCTGTACCAGAACGTGTCGGTCTGGCTGTGGAATAAAATTGAATAT
CGCTATGAAAACGACAAGGATGACGAGCTGGGCTTTAAAACGTTCACCGAGTTCCTGAACTGCTACGCCAACGATGCCTA
TACTGGCGGCACGCAGTGTTCTGATGAGCTGAAAAAATCGCTGGTCGATAACAACATGATCTACGGCGAGAAGAGCGTTA
ATAAAGCGGGCATGATGAACCCGAGCTATCCGCTCAACTATATGGAAAAACCGCTGACGCGCCTGATGCTGGGTCGTTCC
TGGTGGGATCTGAACATCAAAGTTGATGTCGAGAAGTATCCGGGAGCGGTATCGGCAGAAGGTGAGAAGGTTACTGAAAC
CATCAGCCTGTACTCCAATCCGACCAAATGGTTTGCGGGTAACATGCAGTCTACTGGCCTGTGGGCTCCGGCTCAGAAAG
AGGTCACCATTGAGTCTTCTGCATCAGTTCCTGTGACTGTCACCGTGGCGCTGGCCGACGATCTGACCGGACGCGAGAAG
CATGAAGTCGCGCTGAACCGTCCGCCAAAAGTGACGAAAACCTATGATCTGAAAGCCAATGATAAGGTGACCTTCAAGGT
GCCTTACGGTGGTCTGATTTATATCAAGGGCAACAGCCCAAAGAATGAGTCAGCCGAATTCACCTTTACTGGTGTGGTAA
AAGCGCCGTTCTATAAAGACGGCGAATGGAAAAACGCTCTGAACTCCCCTGCGCCGCTGGGCGAGCTGGAATCAGACGCT
TTCGTTTATACCACGCCGAAGAAGAACCTTGAGGCCAGCAATTTCACTGGTGGTGTAGCAGAATTCGCTAAAGATCTGGA
TACCTTTGCCAGCTCGATGAATGACTTCTACGGTCGTAATGATGAAGACGGTAAGCACCGGATGTTTACCTATAAAAACT
TGACGGGGCACAAGCATCGTTTCACCAACGATGTGCAGATCTCCATCGGTGATGCGCACTCGGGTTATCCGGTAATGAAC
AGCAGCTTCTCGACGAACAGCACCACGCTGCCGACGACGCCGCTGAACGACTGGTTGATCTGGCACGAAGTAGGGCACAA
CGCCGCCGAAACGCCGCTGACTGTTCCTGGCGCAACTGAAGTAGCGAACAACGTTCTGGCGCTGTACATGCAGGATCGCT
ATCTCGGCAAGATGAACCGTGTCGCTGACGATATTACTGTCGCGCCGGAATATCTGGAGGAGAGCAACGGTCAGGCATGG
GCGCGCGGCGGTGCGGGCGACCGTCTGCTGATGTACGCGCAGCTGAAGGAGTGGGCAGAGAAAAACTTTGATATCAAACA
GTGGTATCCAGAAGGTGACCTGCCTGAGTTCTACAGCGATCGTGAAGGGATGAAAGGCTGGAACCTGTTCCAGTTGATGC
ACCGTAAAGCACGCGGCGATGATGTTGGCAAAACCAAGTTTGGCGAAAGAAATTACTGTGCCGAATCCAACGGTAACGCT
GCCGACAAGCTGATGCTGTGTGCCTCCTGGGTCGCTCAGACGGATCTTTCGGAGTTCTTTAAGAAATGGAATCCGGGCGC
GAATGCTTACCAGTTACCGGGAGCGAGCGAGATGAACTTCGAGGGCGGTGTGAGCCAGTCGGCTTACGAGACGCTGGCGG
CGCTTAATCTGCCGAAACCGCAGCAAGGGCCGGAAACCATTAATCAGGTTACCGAGCATAAGATGTCAGCTGAGTAA

Protein sequence :
MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPPVDSGTGSLPEVKPDPTPNPEPTPEPTPDPEPTPEPTPDPEPEP
EPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVSFSLEDAQELA
ASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPVVP
VTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDSMGNGVVGVNYYTSSGRGVTGENGKFNFSWGETISFGIDTF
ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINEIINLSLSNGEALSEGDQTF
ERTNEFLEQFESGQAKEIDTAICDSLGGCNSQRWFSLTARNVNEGQIQGVINKLWGVDKDYKSVTKFHVFHDSTNFYGST
GNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFISLGQVGEGKLM
VIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLSDDKWTPDAKASMTVGTNLDTVYFKRHGQVT
GNSAEFGFHPDFAGISVEHLSSYGDLDPQEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGS
VLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPNRVRQQRATGIWVYERYPAVDGALPYTIDSKTGEV
KWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDEADHKTEDSLKAAKAKIFEKFPGLKECKDPTYHYEVNCLEYRP
GTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNVSVWLWNKIEY
RYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDELKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRS
WWDLNIKVDVEKYPGAVSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIESSASVPVTVTVALADDLTGREK
HEVALNRPPKVTKTYDLKANDKVTFKVPYGGLIYIKGNSPKNESAEFTFTGVVKAPFYKDGEWKNALNSPAPLGELESDA
FVYTTPKKNLEASNFTGGVAEFAKDLDTFASSMNDFYGRNDEDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMN
SSFSTNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATEVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNGQAW
ARGGAGDRLLMYAQLKEWAEKNFDIKQWYPEGDLPEFYSDREGMKGWNLFQLMHRKARGDDVGKTKFGERNYCAESNGNA
ADKLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMNFEGGVSQSAYETLAALNLPKPQQGPETINQVTEHKMSAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85238.1 hypothetical protein Not tested PAI V 536 Protein 0.0 98
VC0395_A0370 YP_001216326.1 lipoprotein Not tested VPI-1 Protein 0.0 49
VC0845 NP_230493.1 hypothetical protein Not tested VPI-1 Protein 0.0 49
acfD AAK20802.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75664.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75670.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75649.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75652.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75655.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75646.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75661.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75667.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75658.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yghJ YP_006155471.1 putative lipoprotein AcfD-like precursor VFG0106 Protein 0.0 49