Gene Information

Name : i02_4873a (i02_4873a)
Accession : YP_006152007.1
Strain : Escherichia coli clone D i2
Genome accession: NC_017651
Putative virulence/resistance : Unknown
Product : prophage P4 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4885269 - 4886534 bp
Length : 1266 bp
Strand : +
Note : -

DNA sequence : 
ATGGCATTAACAGATATCAAAGTCAGAACAGCCAAGCCAACAGATAAGCAATATAAGCTGACTGATGGTGGCGGTATGCA
TCTGCTTGTCCATCCAAATGGTTCTAAGTACTGGCGTTTGCAGTACCGTTATGAGGGAAAGCAAAAGATGTTGGCACTTG
GGGTTTATCCTGAAATCACACTAGCGGATGCCAGAGTACGCCGTGACGAGGCGCGTAAGCTGCTTGCGAATGGAGTCGAT
CCGGGAGACAAAAAGAAAAATGATAAGGTTGAACAGAGTAAAGCACGAACCTTTAAAGAAGTCGCGATCGAGTGGCATAG
CACCAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTGGAAGATAATCTTTTTGCAGCGCTTGGTG
AACGTAATATCGCTGAGTTAAAAACTCGAGATTTATTAGCACCCATTAAGGCCGTGGAGATGTCTGGACGTCTTGAAGTG
GCAGCTCGTCTTCAACAGCGCACTACAGCCATCATGCGCTATGCAGTACAAAGTGGGTTAATTGATTATAACCCGGCACA
AGAGATGGCTGGGGCGGTTGCTTCCTGTAATCGACAACATCGTCCGGCGCTTGAATTAAAGCGCATCCCTGAGTTGCTTA
CAAAAATAGATAGCTATACTGGTAGGCCGCTAACCCGATGGGCGACAGAACTCACTTTGCTGATCTTTATTCGGTCCAGT
GAGCTGCGTTTTGCTCGCTGGTCAGAGATCGATTTCGAAGCGTCTATATGGACTATCCCACCGGAGCGGGAGCCTATTCC
TGGAGTGAAGCATTCCCATAGAGGCTCAAAAATGCGTACAACGCATCTAGTGCCTCTTTCAACGCAAGCCCTTGCAATTT
TAAAGCAGATAAAACAGTTTTGTGGGTCTCATGACTTGATATTTATTGGTGATCACGATTCGCACAAGCCTATGAGTGAA
AATACGGTAAATAGTGCGTTACGGGTCATGGGGTATGATACAAAAGTTGAGGTTTGTGGTCATGGCTTCCGAACAATGGC
CTGTAGTTCATTGATCGAATCAGGTTTGTGGTCTCGTGATGCTGTTGAACGTCAGATGAGCCACATGGAGCGAAATTCAG
TGAGGGCCGCGTATATCCATAAAGCAGAACATCTGGAAGAACGGCGATTGATGTTGCAATGGTGGGCCGATTTTCTTGAT
GCGAACCGGGAGAAGGGTATCAGTCCGTTTGAATACGCAAATGTTAACAATCCGCTGAGAAGGTGA

Protein sequence : 
MALTDIKVRTAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVD
PGDKKKNDKVEQSKARTFKEVAIEWHSTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEV
AARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS
ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFCGSHDLIFIGDHDSHKPMSE
NTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLD
ANREKGISPFEYANVNNPLRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 0.0 98
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-148 69
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-148 69
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-147 68
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-147 68
int AAK00456.1 Int Not tested SHI-1 Protein 7e-138 68
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 8e-146 68
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 7e-148 68
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-147 68
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 9e-148 68
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-148 68
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 8e-147 68
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-145 67
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-146 67
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 7e-146 67
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-146 67
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-146 67
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-146 67
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-146 67
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-146 67
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-146 67
int CAC81896.1 integrase Not tested LEE II Protein 4e-136 66
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 7e-129 60
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 7e-129 60
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-120 59
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-84 56
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 7e-116 56
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 7e-116 56
int CAA08754.1 integrase Not tested HPI Protein 1e-114 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 5e-96 55
int YP_002346908.1 integrase Not tested HPI Protein 5e-114 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 5e-114 55
int2 NP_993013.1 integrase Not tested HPI Protein 5e-114 55
int CAA21384.1 - Not tested HPI Protein 5e-114 55
int CAB59974.1 integrase Not tested HPI Protein 2e-115 55
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-110 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-104 53
int CAC39282.1 integrase Not tested LPA Protein 1e-87 44
int AAD44730.1 Int Not tested SHI-2 Protein 4e-87 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-87 44
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-86 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-86 43
int ACU09430.1 integrase Not tested LEE Protein 1e-86 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-86 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-79 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-85 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-85 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-85 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-79 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
i02_4873a YP_006152007.1 prophage P4 integrase VFG1536 Protein 0.0 98
i02_4873a YP_006152007.1 prophage P4 integrase VFG0626 Protein 1e-148 69
i02_4873a YP_006152007.1 prophage P4 integrase VFG1693 Protein 2e-147 68
i02_4873a YP_006152007.1 prophage P4 integrase VFG0783 Protein 7e-87 43
i02_4873a YP_006152007.1 prophage P4 integrase VFG0598 Protein 1e-85 43