Gene Information

Name : intC (i02_4154)
Accession : YP_006151304.1
Strain : Escherichia coli clone D i2
Genome accession: NC_017651
Putative virulence/resistance : Unknown
Product : putative prophage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4145753 - 4146964 bp
Length : 1212 bp
Strand : +
Note : -

DNA sequence :
ATGGCGCTAACCGATGTTAAAGTGAAAACCGCGAAGCCAAAAGAAAAGCCCTATAAGCTGGCTGATAGCGGCGGTATGTA
TCTGCTGATTAACGCTAATGGTTCCAAATACTGGCGTATGAAGTACCGCTTCGCTGGTAAGGAAAAGATGCTGTCTATTG
GCGTTTACCCCGATGTAACGCTTGCCGACGCTCGTGAGAAACGCAGTGAAGCCAGGAAAATACTTGCGGCTGGTGGCGAT
CCGGGTGAGGCAAAAAAAGAAGAAAAAATCGCGCTGCAAATGAGTTTGAAAAACACTTTCGAGGCCGTTGCTCGCGAGTG
GCATCAGTCGAAAGCCGATCGCTGGTCATTACGCTATCGTGATGAAATCATCGACACCTTTGAAAAAGATATCTTTCCCT
ACATCGGTAAGCGCCCTATTGCTGAAATTAAACCAATGGAACTACTGGAAGCACTGCGCAAGATGGAGAAACGCGGAGCG
CTGGAGAAAATGCGCAAGGTCCGTCAGCGCTGTGGTGAAGTGTTCCGCTATGCAATTGTCACTGGCAGAGCTGACTATAA
CCCCGCTCCCGATCTTGCCAGCGCGTTAGCTACACCGAAAAAAGTACATTTCCCCTTCCTTACTGCCAATGAACTTCCTC
ACTTCCTTAACGATCTGGCGGGTTATACCGGCAGTATCATCACGAAGACAGCCACTCAGATCATTATGTTAACCGGTGTA
CGCACGCAAGAACTACGTTTCGCACGCTGGGAGGATATAGATTTTGAGACAAAACTATGGGAGATCCCGGCAGAAGTGAT
GAAGATGAAACGGCCCCATATTGTGCCGCTCTCAGAACAGGTTATTACGCTGTTTAAACAGCTTGAACCGATATCAAAAC
ATCATCCGCTGGTCTTTATCGGCAGAAACGATCCCCGCAAGCCTATCAGTAAGGAAAGTGTTAATCAGGTTATCGAATTA
CTGGGATATAAAGGCAGGCTGACGGGGCACGGTTTCCGCCACACGATGAGTACTATTCTGCATGAAAAAGGCTTTAACTC
AGCGTGGATTGAAACGCAGCTTGCACACGTCGATAAGAACGCGATTCGCGGGACGTATAACCATGCACAGTATCTTGATG
GGCGTAGGGAGATGATGCAGTGGTATGCGGATTATATTGGTTCCCTGACAAGAGAGAATGTTATCCATGGGGATTTTAAG
AACACAATCTAG

Protein sequence :
MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKILAAGGD
PGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGA
LEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVITLFKQLEPISKHHPLVFIGRNDPRKPISKESVNQVIEL
LGYKGRLTGHGFRHTMSTILHEKGFNSAWIETQLAHVDKNAIRGTYNHAQYLDGRREMMQWYADYIGSLTRENVIHGDFK
NTI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 0.0 97
ECs4534 NP_312561.1 integrase Not tested LEE Protein 0.0 97
int AAC31482.1 CP4-like integrase Not tested LEE Protein 0.0 97
int ACU09430.1 integrase Not tested LEE Protein 0.0 97
int CAC39282.1 integrase Not tested LPA Protein 0.0 97
int AAD44730.1 Int Not tested SHI-2 Protein 1e-180 96
aec33 AAW51716.1 Int Not tested AGI-3 Protein 0.0 96
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-180 95
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-180 95
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-180 95
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 8e-126 63
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-125 61
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-75 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 9e-82 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 9e-82 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-84 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-84 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-83 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 5e-84 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-83 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-76 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-84 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-84 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-82 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 7e-84 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-84 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 5e-84 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 5e-84 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-84 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-83 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-84 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-83 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-84 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-83 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-84 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intC YP_006151304.1 putative prophage integrase VFG0783 Protein 0.0 97
intC YP_006151304.1 putative prophage integrase VFG0598 Protein 1e-180 95
intC YP_006151304.1 putative prophage integrase VFG0626 Protein 1e-84 41
intC YP_006151304.1 putative prophage integrase VFG1536 Protein 2e-76 41
intC YP_006151304.1 putative prophage integrase VFG1693 Protein 1e-84 41