Gene Information

Name : ygiX (i02_3456)
Accession : YP_006150616.1
Strain : Escherichia coli clone D i2
Genome accession: NC_017651
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3469055 - 3469714 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTCGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCGGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTATTGATCCTGACTGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGCAACGTCATGC
TAGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACGCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGCAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFRVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 1e-39 44
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 1e-30 44
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 2e-36 43
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 2e-33 42
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 1e-30 41
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 2e-36 41
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 7e-36 41
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 4e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 6e-40 47
ygiX YP_006150616.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 4e-32 42