Gene Information

Name : ycbR (CE10_0967)
Accession : YP_006143073.1
Strain : Escherichia coli CE10
Genome accession: NC_017646
Putative virulence/resistance : Virulence
Product : putative periplasmic pilin chaperone
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1040080 - 1040781 bp
Length : 702 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGTTCGTTCACATGGGCGGC
AGGTAAAGGTGGGGTCGGACTTGCAGCAACACGTCTTGTTTATTCGGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTA
ACACCAGTCCGGATGTTCCTTATCTGATTCAGTCATGGGTGATGACACCAGATAATAAAAAGTCAGCGGACTTTATTATT
ACACCACCGCTATTTGTGCTGAATCCGGCAAACGAGAACCTGCTACGCATTATGTACATTGGCGCGCCGTTGGCGAAAGA
CAGAGAAACTCTTTTCTTCACCAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGGAAGAAGGCAATACCCTGAAGATTG
CCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGTTTAGCGTATCCCTTAGCCGAGGCTCCGGCGAAACTGCGT
TGCACTTCGTCAGCTGACATGGTTACGGTCAGTAACCCAACACCTTATTTCATTACCCTGACAGACCTGAAAATAGGTGG
AAAAGTAGTTAAAAATCAAATGATTTCCCCCTTTGATAAATACCAATTCTCTCTGCCAATGGGTGCCAAAAACAGCAGCG
TAACGTACCGAACTATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAA

Protein sequence : 
MKTCITKGIVTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-38 45
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-37 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ycbR YP_006143073.1 putative periplasmic pilin chaperone VFG0911 Protein 1e-37 45
ycbR YP_006143073.1 putative periplasmic pilin chaperone VFG1644 Protein 2e-37 45
ycbR YP_006143073.1 putative periplasmic pilin chaperone VFG0875 Protein 2e-38 45
ycbR YP_006143073.1 putative periplasmic pilin chaperone VFG0445 Protein 1e-37 42