Gene Information

Name : papA2 (CE10_4860)
Accession : YP_006146816.1
Strain : Escherichia coli CE10
Genome accession: NC_017646
Putative virulence/resistance : Virulence
Product : major pilin protein PapA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4965875 - 4966459 bp
Length : 585 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAAGAGGTTGTTATTTATGATTAAGTCGGTTATTGCCGGTGCGGTAGCTATGGCAGTGGTGTCTTTTGGTGCATA
TGCTGCTCCAACTATTCCTCAGGGGCAGGGTAAAGTAACTTTTAACGGAACTGTTGTTACTGCTCCATGCGGCATTTCTC
AGAAATCAGCTGATCAGTCTATTGATTTTGGGCAGCTTTCAAAAAGCTTCCTTGCGGCAGGAGGTGTATCCAAACCAATG
AATTTAGATATTGAATTGGTTAATTGTGATATCACTTCATTTAAGGGGGTGGGAGGAAACCAGGCAGCAAAAAAAGGGAC
TGTGAACCTGGCTTTTACTGGCCCAATAGTTGCTAATCATAAGGAGGAGTTAGATACCAGCGGGGGGACAGGTACTGCAA
TTGTAGTTCAGGCTGCAGGTAAAAACGTTTCTTTCGATGGGGTTGCAGGTGACGCTTATCCCCTGAAAGATGGAGATAAT
GTGCTGCATTATACTGCTGTTGTTAAGAAGTCGTCAGCCGCTGGTGCCACTGTTACTGAAGGTGCCTTCTCAGCAGTTGC
GAATTTCAACCTGACTTATCAGTAA

Protein sequence : 
MKKRLLFMIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVTAPCGISQKSADQSIDFGQLSKSFLAAGGVSKPM
NLDIELVNCDITSFKGVGGNQAAKKGTVNLAFTGPIVANHKEELDTSGGTGTAIVVQAAGKNVSFDGVAGDAYPLKDGDN
VLHYTAVVKKSSAAGATVTEGAFSAVANFNLTYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papA AAZ04426.1 major fibrial protein Virulence PAI I APEC-O1 Protein 2e-70 83
papA YP_854256.1 major fibrial protein Virulence PAI I APEC-O1 Protein 3e-70 83
papA AAC61718.1 PapA Virulence PAI I CFT073 Protein 2e-33 68
papA NP_755467.1 PapA protein Virulence PAI I CFT073 Protein 3e-51 68
papA AAL67417.1 PapA Virulence PAI II CFT073 Protein 1e-52 65
papA_2 NP_757036.1 PapA protein Virulence PAI II CFT073 Protein 3e-52 65
papA YP_002414017.1 P-fimbriae major subunit Not tested Not named Protein 1e-41 60
prfA CAD42031.1 PrfA protein Virulence PAI II 536 Protein 1e-43 59
pixA CAE85161.1 PixA protein Not tested PAI V 536 Protein 3e-35 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papA2 YP_006146816.1 major pilin protein PapA VFG0882 Protein 9e-52 68
papA2 YP_006146816.1 major pilin protein PapA VFG0893 Protein 8e-53 65
papA2 YP_006146816.1 major pilin protein PapA VFG1550 Protein 5e-44 59