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Name : lpfC (CE10_4371) Accession : YP_006146356.1 Strain : Escherichia coli CE10 Genome accession: NC_017646 Putative virulence/resistance : Unknown Product : long polar fimbrial operon protein LpfC Function : - COG functional category : - COG ID : - EC number : - Position : 4452601 - 4455123 bp Length : 2523 bp Strand : - Note : - DNA sequence : ATGATGACGACCAGAATAAAGGTTGGCCTCACGGCAGGGACGTGTCTGATTTTCTCGCAAAGCCTGATGGCCGAGGTCAG TGTATTCAATCCGGCGCTTCTGGAAATCGACCATCAATCCGGAGTCGATATTCGCCAGTTTAATCGGGCAAACCTGATGC CCCCAGGTGTTTATAGCGTTGATATTTTTATCAACGGTAAAATGTTTGAACGTCAGGATGTGACCTTTGTTCAGGATAAT CCCGATGCTGATTTACACGCCTGCTTTGTCGCTATTAAAAAAACGCTAACCACCTTTGGCGTAAAAGTTGATGCGCTGAA ATCGCTCAATGATGTAGATGAAACAGTCTGTATTGATCCTGGGCCACGCATTGAAGGCTCATCATGGCAGTTCGACAGCG ATAAACTGCAACTGAATATCTCCATTCCCCAAATCTATATGGATGCGATGGCTTATGATTACATCAGCCCCTCGCGTTGG GATGAGGGGATTAACGCGCTCACCATCAACTACGATTTTTCTGGTTCACATACTCTACGTTCGGATTATGGTTCACAAGA GACAGATACCAGCTATCTCAATCTGCGCAATGGACTGAATATTGGGCCGTGGAGATTACGCAATTACAGCACCTTAAATA CGACCGATGGCAGTGCAGAATACAACTCTATAAGCACCTGGATACAACGTGATATAGCTGCGTTAAGAAGCCAGATTATG ATAGGTGATACGTGGACGGCGAGCGATATCTTCGACAGTACGCAAATTCGTGGCGCACGCTTGTATACCGATAACGATAT GTTGCCTGCCAGCCAAAACGGATTTGCCCCCGTAGTGCGTGGGATTGCAAAGTCTAACGCCACTGTCATTATTCGCCAGA ATGGCTACGTGATTTATCAGTCAGCCGTTCCACAAGGTGCTTTTGAAATTACCGACCTCAACACCGCCAGTACAGGTGGT GATCTGGACGTAACCATCAAAGAAGAAGACGGTAGCGAACAACGATTTACTCAACCTTATGCGTCGTTAGCCATCCTCAA ACGTGAAGGTCAAACTGATGTTGATGTCAGTGTGGGAGAATTACGCGATGAAGATGGCTTTACCCCTGACGTTATTCAGG CTCAGATCCTTCATGGTTTTCCCTACGGTTTCACCTTGTATGGAGGTATGCAGGCTGCTGAAAAGTATGGTTCTGCCGCT TTGGGTGTCGGTAAAGATCTTGGCGCATTGGGCGCAATTTCTTTCGATGTGACACATGCTCGCGCGAAATTTAGCCATGA TGATACGGAAACCGGTCAGTCTTATCGCTTCCTGTACTCGAAACGCTTTGACGATACGGATACCAGCTTGCGCCTGGTTG GCTATCGTTACTCCACCGAAGGTTATTATACCCTCAATGAATGGGCGTCCCGGCGTAATAATCCTGAAGATTTCTGGGAA ACCGGTAACCGCCGCAGCCGTGTGGAAGGAACGTTAACGCAATCACTGGGCAGAGATTATGGCAACTTATATCTGACATT AAGTCGCCAGCAGTACTGGCATACCGATGATGTTGAACGATTAATGCAATTTGGCTACAGCAGTAGCTGGAAGCGTCTCT CGTGGAACGTCTCCTGGAGTTATTCCAATACTGCCCGGCAGGGGACGGGGAACAACCATGCCAGTGATAACACCAGTGAG CAGATCTACATGCTCTCTTTATCTGTTCCTTTATCGGGCTGGTGGGGGAATAGTTATGCCACCTATTCTGTTTCACAAAA CGATAATTCCGGTAGCTCACATCAACTTGGACTCAGCGGTACGGCGCTGGAAAGAAATAACCTTTCCTGGAATTTAATGC AGTCCTATAACAGCCATGATGATGAGGTTGGCGGTAATATGTCCCTGACCTATGATGGCACTTATGGCACGGTGAACGGC AGCTATAACTATAGCCAAAATTCTCAGAGGCTGAATTATGGTATCAGAGGGGGAATTCTGGCTCACAGCGAAGGCGTAAC GTTAAGCCAGGAGTTGGGTGAAACCATAGCTCTTGTTAAAGCACCAGGGGCTGCCGGGTTAGAAATAGATAATATGCGCG GTGCGGCGACGGACTGGCGCGGCTATACGGTCAAGACACAGCTAAACCCTTATGATGAAAACCGGGTAGCAATCAGCGAT AACTATTTCTCGAAGTCGAATATAGAACTTGATAATACCGTCGTTACGATGGTTCCCACGCGTGGTGCAGTGGTTAAGGC CGAATTTGTTACTCGTGTAGGTTATCGTGTGCTTTTCAGAGTGGCGGGTACACAAGGTAAACCAGCACCTTTTGGCGCTA TTGCTACAGTACAAAATACAAGCTCCGCTGATTCAGGAATTGTCGGTGACCAGGGAGAGCTTTATCTTTCGGGCCTTCCT GAAAAAGGGCAGGTGATGCTCTCCTGGGGAGAAAATGTCGCCACTACATGCACCTTCGATTATTCACTTTCAATACCAGA AAGTGAAAGCGGCTTAATTGAACAAGGTGTGACATGTCATTAA Protein sequence : MMTTRIKVGLTAGTCLIFSQSLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDN PDADLHACFVAIKKTLTTFGVKVDALKSLNDVDETVCIDPGPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPSRW DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTTDGSAEYNSISTWIQRDIAALRSQIM IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGG DLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGELRDEDGFTPDVIQAQILHGFPYGFTLYGGMQAAEKYGSAA LGVGKDLGALGAISFDVTHARAKFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNNPEDFWE TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSE QIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGTYGTVNG SYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTRVGYRVLFRVAGTQGKPAPFGAIATVQNTSSADSGIVGDQGELYLSGLP EKGQVMLSWGENVATTCTFDYSLSIPESESGLIEQGVTCH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 99 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 95 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 95 |
