Gene Information

Name : sicA (CE10_4293)
Accession : YP_006146279.1
Strain : Escherichia coli CE10
Genome accession: NC_017646
Putative virulence/resistance : Virulence
Product : putative type III secretion chaperone
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4362262 - 4362759 bp
Length : 498 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAAGCACAAATCTGGATTTAGAAGAAAATAAAGAAATTGCCAGTAAGTTCGAACGTGCATTAGGTATGGGAGCAAC
GCTTGCAGAGCTGCATGGCATAACCCCGGATACCCTTGAAGGCGTTTATGCTTACGCTTATAACTTTTATGAAAAAGGAA
GACTTGACGAAGCTGAACTCTTTTTTAAATTTCTCTGTATTTATGATTTCCAAAATTATAACTATCTAAAAGGATATGCC
GCCGTCTGTCAATTGAAGAAAGATTATCAAAAGGCATTCGACATGTATCATATCTGTTTAATGCTATCTCCCGATAACGA
TTTCTCTTTGGTTTATTATATGGGTCAATGCCAGATGGGCTTAAAAAACATTAAAATGGCCACTGAGTTATTTAATACTG
TCGTAACCTATAGTCAAAATGAAAAAATTAAAGAGATGGCTACTGCTTATCTTGAACTTTTGACAGCCAATACCGAAGAG
GAAGTTCAAACAGAGTGA

Protein sequence : 
MESTNLDLEENKEIASKFERALGMGATLAELHGITPDTLEGVYAYAYNFYEKGRLDEAELFFKFLCIYDFQNYNYLKGYA
AVCQLKKDYQKAFDMYHICLMLSPDNDFSLVYYMGQCQMGLKNIKMATELFNTVVTYSQNEKIKEMATAYLELLTANTEE
EVQTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 1e-27 48
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 1e-27 48
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 1e-27 48
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-27 48
ECs3708 NP_311735.1 hypothetical protein Not tested LIM Protein 6e-34 45
sycB AAS66850.1 SycB Not tested SSR-1 Protein 1e-19 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sicA YP_006146279.1 putative type III secretion chaperone VFG0547 Protein 4e-28 48
sicA YP_006146279.1 putative type III secretion chaperone VFG0988 Protein 1e-28 42
sicA YP_006146279.1 putative type III secretion chaperone VFG1769 Protein 4e-22 41